001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 *
021 */
022package org.biojava.nbio.structure.io.mmcif.model;
023
024
025/**
026 *  Data items in the ENTITY_SRC_GEN category record details of
027 *  the source from which the entity was obtained in cases
028 *  where the source was genetically manipulated.  The
029 *  following are treated separately:  items pertaining to the tissue
030 *  from which the gene was obtained, items pertaining to the host
031 *  organism for gene expression and items pertaining to the actual
032 *  producing organism (plasmid).
033 *
034 * @author Andreas Prlic
035 *
036 */
037public class EntitySrcGen {
038        String  entity_id;
039        String  expression_system_id;
040        String  gene_src_common_name;
041        String  gene_src_details        ;
042        String  gene_src_dev_stage       ;
043        String  gene_src_genus   ;
044        String  gene_src_species        ;
045        String  gene_src_strain  ;
046        String  gene_src_tissue  ;
047        String  gene_src_tissue_fraction;
048        String  host_org_common_name     ;
049        String  host_org_details         ;
050        String  host_org_genus   ;
051        String  host_org_species;
052        String  host_org_strain  ;
053        String  pdbx_src_id;
054        String  pdbx_seq_type;
055        String  pdbx_alt_source_flag;
056        String  pdbx_beg_seq_num;
057        String  pdbx_end_seq_num;
058        String  pdbx_description;
059        String  pdbx_gene_src_atcc;
060        String  pdbx_gene_src_cell      ;
061        String  pdbx_gene_src_cell_line;
062        String  pdbx_gene_src_cellular_location;
063        String  pdbx_gene_src_fragment   ;
064        String  pdbx_gene_src_gene       ;
065        String  pdbx_gene_src_ncbi_taxonomy_id;
066        String  pdbx_gene_src_organ      ;
067        String  pdbx_gene_src_organelle ;
068        String  pdbx_gene_src_plasmid    ;
069        String  pdbx_gene_src_plasmid_name       ;
070        String  pdbx_gene_src_scientific_name;
071        String  pdbx_gene_src_variant    ;
072        String  pdbx_host_org_atcc       ;
073        String  pdbx_host_org_cell       ;
074        String  pdbx_host_org_cell_line ;
075        String  pdbx_host_org_cellular_location ;
076        String  pdbx_host_org_culture_collection ;
077        String  pdbx_host_org_gene        ;
078        String  pdbx_host_org_ncbi_taxonomy_id ;
079        String  pdbx_host_org_organ      ;
080        String  pdbx_host_org_organelle ;
081        String  pdbx_host_org_scientific_name ;
082        String  pdbx_host_org_strain      ;
083        String  pdbx_host_org_tissue     ;
084        String  pdbx_host_org_tissue_fraction ;
085        String  pdbx_host_org_variant    ;
086        String  pdbx_host_org_vector     ;
087        String  pdbx_host_org_vector_type;
088        String  plasmid_details  ;
089        String  plasmid_name     ;
090        String  start_construct_id ;
091        public String getEntity_id() {
092                return entity_id;
093        }
094        public void setEntity_id(String entity_id) {
095                this.entity_id = entity_id;
096        }
097        public String getExpression_system_id() {
098                return expression_system_id;
099        }
100        public void setExpression_system_id(String expression_system_id) {
101                this.expression_system_id = expression_system_id;
102        }
103        public String getGene_src_common_name() {
104                return gene_src_common_name;
105        }
106        public void setGene_src_common_name(String gene_src_common_name) {
107                this.gene_src_common_name = gene_src_common_name;
108        }
109        public String getGene_src_details() {
110                return gene_src_details;
111        }
112        public void setGene_src_details(String gene_src_details) {
113                this.gene_src_details = gene_src_details;
114        }
115        public String getGene_src_dev_stage() {
116                return gene_src_dev_stage;
117        }
118        public void setGene_src_dev_stage(String gene_src_dev_stage) {
119                this.gene_src_dev_stage = gene_src_dev_stage;
120        }
121        public String getGene_src_genus() {
122                return gene_src_genus;
123        }
124        public void setGene_src_genus(String gene_src_genus) {
125                this.gene_src_genus = gene_src_genus;
126        }
127        public String getGene_src_species() {
128                return gene_src_species;
129        }
130        public void setGene_src_species(String gene_src_species) {
131                this.gene_src_species = gene_src_species;
132        }
133        public String getGene_src_strain() {
134                return gene_src_strain;
135        }
136        public void setGene_src_strain(String gene_src_strain) {
137                this.gene_src_strain = gene_src_strain;
138        }
139        public String getGene_src_tissue() {
140                return gene_src_tissue;
141        }
142        public void setGene_src_tissue(String gene_src_tissue) {
143                this.gene_src_tissue = gene_src_tissue;
144        }
145        public String getGene_src_tissue_fraction() {
146                return gene_src_tissue_fraction;
147        }
148        public void setGene_src_tissue_fraction(String gene_src_tissue_fraction) {
149                this.gene_src_tissue_fraction = gene_src_tissue_fraction;
150        }
151        public String getHost_org_common_name() {
152                return host_org_common_name;
153        }
154        public void setHost_org_common_name(String host_org_common_name) {
155                this.host_org_common_name = host_org_common_name;
156        }
157        public String getHost_org_details() {
158                return host_org_details;
159        }
160        public void setHost_org_details(String host_org_details) {
161                this.host_org_details = host_org_details;
162        }
163        public String getHost_org_genus() {
164                return host_org_genus;
165        }
166        public void setHost_org_genus(String host_org_genus) {
167                this.host_org_genus = host_org_genus;
168        }
169        public String getHost_org_species() {
170                return host_org_species;
171        }
172        public void setHost_org_species(String host_org_species) {
173                this.host_org_species = host_org_species;
174        }
175        public String getHost_org_strain() {
176                return host_org_strain;
177        }
178        public void setHost_org_strain(String host_org_strain) {
179                this.host_org_strain = host_org_strain;
180        }
181        public String getPdbx_src_id() {
182                return pdbx_src_id;
183        }
184        public void setPdbx_src_id(String pdbx_src_id) {
185                this.pdbx_src_id = pdbx_src_id;
186        }
187        public String getPdbx_seq_type() {
188                return pdbx_seq_type;
189        }
190        public void setPdbx_seq_type(String pdbx_seq_type) {
191                this.pdbx_seq_type = pdbx_seq_type;
192        }
193        /**
194         * @return the pdbx_alt_source_flag
195         */
196        public String getPdbx_alt_source_flag() {
197                return pdbx_alt_source_flag;
198        }
199        /**
200         * @param pdbx_alt_source_flag the pdbx_alt_source_flag to set
201         */
202        public void setPdbx_alt_source_flag(String pdbx_alt_source_flag) {
203                this.pdbx_alt_source_flag = pdbx_alt_source_flag;
204        }
205        public String getPdbx_beg_seq_num() {
206                return pdbx_beg_seq_num;
207        }
208        public void setPdbx_beg_seq_num(String pdbx_beg_seq_num) {
209                this.pdbx_beg_seq_num = pdbx_beg_seq_num;
210        }
211        public String getPdbx_end_seq_num() {
212                return pdbx_end_seq_num;
213        }
214        public void setPdbx_end_seq_num(String pdbx_end_seq_num) {
215                this.pdbx_end_seq_num = pdbx_end_seq_num;
216        }
217        public String getPdbx_description() {
218                return pdbx_description;
219        }
220        public void setPdbx_description(String pdbx_description) {
221                this.pdbx_description = pdbx_description;
222        }
223        public String getPdbx_gene_src_atcc() {
224                return pdbx_gene_src_atcc;
225        }
226        public void setPdbx_gene_src_atcc(String pdbx_gene_src_atcc) {
227                this.pdbx_gene_src_atcc = pdbx_gene_src_atcc;
228        }
229        public String getPdbx_gene_src_cell() {
230                return pdbx_gene_src_cell;
231        }
232        public void setPdbx_gene_src_cell(String pdbx_gene_src_cell) {
233                this.pdbx_gene_src_cell = pdbx_gene_src_cell;
234        }
235        public String getPdbx_gene_src_cell_line() {
236                return pdbx_gene_src_cell_line;
237        }
238        public void setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line) {
239                this.pdbx_gene_src_cell_line = pdbx_gene_src_cell_line;
240        }
241        public String getPdbx_gene_src_cellular_location() {
242                return pdbx_gene_src_cellular_location;
243        }
244        public void setPdbx_gene_src_cellular_location(
245                        String pdbx_gene_src_cellular_location) {
246                this.pdbx_gene_src_cellular_location = pdbx_gene_src_cellular_location;
247        }
248        public String getPdbx_gene_src_fragment() {
249                return pdbx_gene_src_fragment;
250        }
251        public void setPdbx_gene_src_fragment(String pdbx_gene_src_fragment) {
252                this.pdbx_gene_src_fragment = pdbx_gene_src_fragment;
253        }
254        public String getPdbx_gene_src_gene() {
255                return pdbx_gene_src_gene;
256        }
257        public void setPdbx_gene_src_gene(String pdbx_gene_src_gene) {
258                this.pdbx_gene_src_gene = pdbx_gene_src_gene;
259        }
260        public String getPdbx_gene_src_ncbi_taxonomy_id() {
261                return pdbx_gene_src_ncbi_taxonomy_id;
262        }
263        public void setPdbx_gene_src_ncbi_taxonomy_id(
264                        String pdbx_gene_src_ncbi_taxonomy_id) {
265                this.pdbx_gene_src_ncbi_taxonomy_id = pdbx_gene_src_ncbi_taxonomy_id;
266        }
267        public String getPdbx_gene_src_organ() {
268                return pdbx_gene_src_organ;
269        }
270        public void setPdbx_gene_src_organ(String pdbx_gene_src_organ) {
271                this.pdbx_gene_src_organ = pdbx_gene_src_organ;
272        }
273        public String getPdbx_gene_src_organelle() {
274                return pdbx_gene_src_organelle;
275        }
276        public void setPdbx_gene_src_organelle(String pdbx_gene_src_organelle) {
277                this.pdbx_gene_src_organelle = pdbx_gene_src_organelle;
278        }
279        public String getPdbx_gene_src_plasmid() {
280                return pdbx_gene_src_plasmid;
281        }
282        public void setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid) {
283                this.pdbx_gene_src_plasmid = pdbx_gene_src_plasmid;
284        }
285        public String getPdbx_gene_src_plasmid_name() {
286                return pdbx_gene_src_plasmid_name;
287        }
288        public void setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name) {
289                this.pdbx_gene_src_plasmid_name = pdbx_gene_src_plasmid_name;
290        }
291        public String getPdbx_gene_src_scientific_name() {
292                return pdbx_gene_src_scientific_name;
293        }
294        public void setPdbx_gene_src_scientific_name(
295                        String pdbx_gene_src_scientific_name) {
296                this.pdbx_gene_src_scientific_name = pdbx_gene_src_scientific_name;
297        }
298        public String getPdbx_gene_src_variant() {
299                return pdbx_gene_src_variant;
300        }
301        public void setPdbx_gene_src_variant(String pdbx_gene_src_variant) {
302                this.pdbx_gene_src_variant = pdbx_gene_src_variant;
303        }
304        public String getPdbx_host_org_atcc() {
305                return pdbx_host_org_atcc;
306        }
307        public void setPdbx_host_org_atcc(String pdbx_host_org_atcc) {
308                this.pdbx_host_org_atcc = pdbx_host_org_atcc;
309        }
310        public String getPdbx_host_org_cell() {
311                return pdbx_host_org_cell;
312        }
313        public void setPdbx_host_org_cell(String pdbx_host_org_cell) {
314                this.pdbx_host_org_cell = pdbx_host_org_cell;
315        }
316        public String getPdbx_host_org_cell_line() {
317                return pdbx_host_org_cell_line;
318        }
319        public void setPdbx_host_org_cell_line(String pdbx_host_org_cell_line) {
320                this.pdbx_host_org_cell_line = pdbx_host_org_cell_line;
321        }
322        public String getPdbx_host_org_cellular_location() {
323                return pdbx_host_org_cellular_location;
324        }
325        public void setPdbx_host_org_cellular_location(
326                        String pdbx_host_org_cellular_location) {
327                this.pdbx_host_org_cellular_location = pdbx_host_org_cellular_location;
328        }
329        public String getPdbx_host_org_culture_collection() {
330                return pdbx_host_org_culture_collection;
331        }
332        public void setPdbx_host_org_culture_collection(
333                        String pdbx_host_org_culture_collection) {
334                this.pdbx_host_org_culture_collection = pdbx_host_org_culture_collection;
335        }
336        public String getPdbx_host_org_gene() {
337                return pdbx_host_org_gene;
338        }
339        public void setPdbx_host_org_gene(String pdbx_host_org_gene) {
340                this.pdbx_host_org_gene = pdbx_host_org_gene;
341        }
342        public String getPdbx_host_org_ncbi_taxonomy_id() {
343                return pdbx_host_org_ncbi_taxonomy_id;
344        }
345        public void setPdbx_host_org_ncbi_taxonomy_id(
346                        String pdbx_host_org_ncbi_taxonomy_id) {
347                this.pdbx_host_org_ncbi_taxonomy_id = pdbx_host_org_ncbi_taxonomy_id;
348        }
349        public String getPdbx_host_org_organ() {
350                return pdbx_host_org_organ;
351        }
352        public void setPdbx_host_org_organ(String pdbx_host_org_organ) {
353                this.pdbx_host_org_organ = pdbx_host_org_organ;
354        }
355        public String getPdbx_host_org_organelle() {
356                return pdbx_host_org_organelle;
357        }
358        public void setPdbx_host_org_organelle(String pdbx_host_org_organelle) {
359                this.pdbx_host_org_organelle = pdbx_host_org_organelle;
360        }
361        public String getPdbx_host_org_scientific_name() {
362                return pdbx_host_org_scientific_name;
363        }
364        public void setPdbx_host_org_scientific_name(
365                        String pdbx_host_org_scientific_name) {
366                this.pdbx_host_org_scientific_name = pdbx_host_org_scientific_name;
367        }
368        public String getPdbx_host_org_strain() {
369                return pdbx_host_org_strain;
370        }
371        public void setPdbx_host_org_strain(String pdbx_host_org_strain) {
372                this.pdbx_host_org_strain = pdbx_host_org_strain;
373        }
374        public String getPdbx_host_org_tissue() {
375                return pdbx_host_org_tissue;
376        }
377        public void setPdbx_host_org_tissue(String pdbx_host_org_tissue) {
378                this.pdbx_host_org_tissue = pdbx_host_org_tissue;
379        }
380        public String getPdbx_host_org_tissue_fraction() {
381                return pdbx_host_org_tissue_fraction;
382        }
383        public void setPdbx_host_org_tissue_fraction(
384                        String pdbx_host_org_tissue_fraction) {
385                this.pdbx_host_org_tissue_fraction = pdbx_host_org_tissue_fraction;
386        }
387        public String getPdbx_host_org_variant() {
388                return pdbx_host_org_variant;
389        }
390        public void setPdbx_host_org_variant(String pdbx_host_org_variant) {
391                this.pdbx_host_org_variant = pdbx_host_org_variant;
392        }
393        public String getPdbx_host_org_vector() {
394                return pdbx_host_org_vector;
395        }
396        public void setPdbx_host_org_vector(String pdbx_host_org_vector) {
397                this.pdbx_host_org_vector = pdbx_host_org_vector;
398        }
399        public String getPdbx_host_org_vector_type() {
400                return pdbx_host_org_vector_type;
401        }
402        public void setPdbx_host_org_vector_type(String pdbx_host_org_vector_type) {
403                this.pdbx_host_org_vector_type = pdbx_host_org_vector_type;
404        }
405        public String getPlasmid_details() {
406                return plasmid_details;
407        }
408        public void setPlasmid_details(String plasmid_details) {
409                this.plasmid_details = plasmid_details;
410        }
411        public String getPlasmid_name() {
412                return plasmid_name;
413        }
414        public void setPlasmid_name(String plasmid_name) {
415                this.plasmid_name = plasmid_name;
416        }
417        public String getStart_construct_id() {
418                return start_construct_id;
419        }
420        public void setStart_construct_id(String start_construct_id) {
421                this.start_construct_id = start_construct_id;
422        }
423
424
425
426
427}