001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * 021 */ 022package org.biojava.nbio.structure.io.mmcif.model; 023 024 025/** 026 * Data items in the ENTITY_SRC_GEN category record details of 027 * the source from which the entity was obtained in cases 028 * where the source was genetically manipulated. The 029 * following are treated separately: items pertaining to the tissue 030 * from which the gene was obtained, items pertaining to the host 031 * organism for gene expression and items pertaining to the actual 032 * producing organism (plasmid). 033 * 034 * @author Andreas Prlic 035 * 036 */ 037public class EntitySrcGen { 038 String entity_id; 039 String expression_system_id; 040 String gene_src_common_name; 041 String gene_src_details ; 042 String gene_src_dev_stage ; 043 String gene_src_genus ; 044 String gene_src_species ; 045 String gene_src_strain ; 046 String gene_src_tissue ; 047 String gene_src_tissue_fraction; 048 String host_org_common_name ; 049 String host_org_details ; 050 String host_org_genus ; 051 String host_org_species; 052 String host_org_strain ; 053 String pdbx_src_id; 054 String pdbx_seq_type; 055 String pdbx_alt_source_flag; 056 String pdbx_beg_seq_num; 057 String pdbx_end_seq_num; 058 String pdbx_description; 059 String pdbx_gene_src_atcc; 060 String pdbx_gene_src_cell ; 061 String pdbx_gene_src_cell_line; 062 String pdbx_gene_src_cellular_location; 063 String pdbx_gene_src_fragment ; 064 String pdbx_gene_src_gene ; 065 String pdbx_gene_src_ncbi_taxonomy_id; 066 String pdbx_gene_src_organ ; 067 String pdbx_gene_src_organelle ; 068 String pdbx_gene_src_plasmid ; 069 String pdbx_gene_src_plasmid_name ; 070 String pdbx_gene_src_scientific_name; 071 String pdbx_gene_src_variant ; 072 String pdbx_host_org_atcc ; 073 String pdbx_host_org_cell ; 074 String pdbx_host_org_cell_line ; 075 String pdbx_host_org_cellular_location ; 076 String pdbx_host_org_culture_collection ; 077 String pdbx_host_org_gene ; 078 String pdbx_host_org_ncbi_taxonomy_id ; 079 String pdbx_host_org_organ ; 080 String pdbx_host_org_organelle ; 081 String pdbx_host_org_scientific_name ; 082 String pdbx_host_org_strain ; 083 String pdbx_host_org_tissue ; 084 String pdbx_host_org_tissue_fraction ; 085 String pdbx_host_org_variant ; 086 String pdbx_host_org_vector ; 087 String pdbx_host_org_vector_type; 088 String plasmid_details ; 089 String plasmid_name ; 090 String start_construct_id ; 091 public String getEntity_id() { 092 return entity_id; 093 } 094 public void setEntity_id(String entity_id) { 095 this.entity_id = entity_id; 096 } 097 public String getExpression_system_id() { 098 return expression_system_id; 099 } 100 public void setExpression_system_id(String expression_system_id) { 101 this.expression_system_id = expression_system_id; 102 } 103 public String getGene_src_common_name() { 104 return gene_src_common_name; 105 } 106 public void setGene_src_common_name(String gene_src_common_name) { 107 this.gene_src_common_name = gene_src_common_name; 108 } 109 public String getGene_src_details() { 110 return gene_src_details; 111 } 112 public void setGene_src_details(String gene_src_details) { 113 this.gene_src_details = gene_src_details; 114 } 115 public String getGene_src_dev_stage() { 116 return gene_src_dev_stage; 117 } 118 public void setGene_src_dev_stage(String gene_src_dev_stage) { 119 this.gene_src_dev_stage = gene_src_dev_stage; 120 } 121 public String getGene_src_genus() { 122 return gene_src_genus; 123 } 124 public void setGene_src_genus(String gene_src_genus) { 125 this.gene_src_genus = gene_src_genus; 126 } 127 public String getGene_src_species() { 128 return gene_src_species; 129 } 130 public void setGene_src_species(String gene_src_species) { 131 this.gene_src_species = gene_src_species; 132 } 133 public String getGene_src_strain() { 134 return gene_src_strain; 135 } 136 public void setGene_src_strain(String gene_src_strain) { 137 this.gene_src_strain = gene_src_strain; 138 } 139 public String getGene_src_tissue() { 140 return gene_src_tissue; 141 } 142 public void setGene_src_tissue(String gene_src_tissue) { 143 this.gene_src_tissue = gene_src_tissue; 144 } 145 public String getGene_src_tissue_fraction() { 146 return gene_src_tissue_fraction; 147 } 148 public void setGene_src_tissue_fraction(String gene_src_tissue_fraction) { 149 this.gene_src_tissue_fraction = gene_src_tissue_fraction; 150 } 151 public String getHost_org_common_name() { 152 return host_org_common_name; 153 } 154 public void setHost_org_common_name(String host_org_common_name) { 155 this.host_org_common_name = host_org_common_name; 156 } 157 public String getHost_org_details() { 158 return host_org_details; 159 } 160 public void setHost_org_details(String host_org_details) { 161 this.host_org_details = host_org_details; 162 } 163 public String getHost_org_genus() { 164 return host_org_genus; 165 } 166 public void setHost_org_genus(String host_org_genus) { 167 this.host_org_genus = host_org_genus; 168 } 169 public String getHost_org_species() { 170 return host_org_species; 171 } 172 public void setHost_org_species(String host_org_species) { 173 this.host_org_species = host_org_species; 174 } 175 public String getHost_org_strain() { 176 return host_org_strain; 177 } 178 public void setHost_org_strain(String host_org_strain) { 179 this.host_org_strain = host_org_strain; 180 } 181 public String getPdbx_src_id() { 182 return pdbx_src_id; 183 } 184 public void setPdbx_src_id(String pdbx_src_id) { 185 this.pdbx_src_id = pdbx_src_id; 186 } 187 public String getPdbx_seq_type() { 188 return pdbx_seq_type; 189 } 190 public void setPdbx_seq_type(String pdbx_seq_type) { 191 this.pdbx_seq_type = pdbx_seq_type; 192 } 193 /** 194 * @return the pdbx_alt_source_flag 195 */ 196 public String getPdbx_alt_source_flag() { 197 return pdbx_alt_source_flag; 198 } 199 /** 200 * @param pdbx_alt_source_flag the pdbx_alt_source_flag to set 201 */ 202 public void setPdbx_alt_source_flag(String pdbx_alt_source_flag) { 203 this.pdbx_alt_source_flag = pdbx_alt_source_flag; 204 } 205 public String getPdbx_beg_seq_num() { 206 return pdbx_beg_seq_num; 207 } 208 public void setPdbx_beg_seq_num(String pdbx_beg_seq_num) { 209 this.pdbx_beg_seq_num = pdbx_beg_seq_num; 210 } 211 public String getPdbx_end_seq_num() { 212 return pdbx_end_seq_num; 213 } 214 public void setPdbx_end_seq_num(String pdbx_end_seq_num) { 215 this.pdbx_end_seq_num = pdbx_end_seq_num; 216 } 217 public String getPdbx_description() { 218 return pdbx_description; 219 } 220 public void setPdbx_description(String pdbx_description) { 221 this.pdbx_description = pdbx_description; 222 } 223 public String getPdbx_gene_src_atcc() { 224 return pdbx_gene_src_atcc; 225 } 226 public void setPdbx_gene_src_atcc(String pdbx_gene_src_atcc) { 227 this.pdbx_gene_src_atcc = pdbx_gene_src_atcc; 228 } 229 public String getPdbx_gene_src_cell() { 230 return pdbx_gene_src_cell; 231 } 232 public void setPdbx_gene_src_cell(String pdbx_gene_src_cell) { 233 this.pdbx_gene_src_cell = pdbx_gene_src_cell; 234 } 235 public String getPdbx_gene_src_cell_line() { 236 return pdbx_gene_src_cell_line; 237 } 238 public void setPdbx_gene_src_cell_line(String pdbx_gene_src_cell_line) { 239 this.pdbx_gene_src_cell_line = pdbx_gene_src_cell_line; 240 } 241 public String getPdbx_gene_src_cellular_location() { 242 return pdbx_gene_src_cellular_location; 243 } 244 public void setPdbx_gene_src_cellular_location( 245 String pdbx_gene_src_cellular_location) { 246 this.pdbx_gene_src_cellular_location = pdbx_gene_src_cellular_location; 247 } 248 public String getPdbx_gene_src_fragment() { 249 return pdbx_gene_src_fragment; 250 } 251 public void setPdbx_gene_src_fragment(String pdbx_gene_src_fragment) { 252 this.pdbx_gene_src_fragment = pdbx_gene_src_fragment; 253 } 254 public String getPdbx_gene_src_gene() { 255 return pdbx_gene_src_gene; 256 } 257 public void setPdbx_gene_src_gene(String pdbx_gene_src_gene) { 258 this.pdbx_gene_src_gene = pdbx_gene_src_gene; 259 } 260 public String getPdbx_gene_src_ncbi_taxonomy_id() { 261 return pdbx_gene_src_ncbi_taxonomy_id; 262 } 263 public void setPdbx_gene_src_ncbi_taxonomy_id( 264 String pdbx_gene_src_ncbi_taxonomy_id) { 265 this.pdbx_gene_src_ncbi_taxonomy_id = pdbx_gene_src_ncbi_taxonomy_id; 266 } 267 public String getPdbx_gene_src_organ() { 268 return pdbx_gene_src_organ; 269 } 270 public void setPdbx_gene_src_organ(String pdbx_gene_src_organ) { 271 this.pdbx_gene_src_organ = pdbx_gene_src_organ; 272 } 273 public String getPdbx_gene_src_organelle() { 274 return pdbx_gene_src_organelle; 275 } 276 public void setPdbx_gene_src_organelle(String pdbx_gene_src_organelle) { 277 this.pdbx_gene_src_organelle = pdbx_gene_src_organelle; 278 } 279 public String getPdbx_gene_src_plasmid() { 280 return pdbx_gene_src_plasmid; 281 } 282 public void setPdbx_gene_src_plasmid(String pdbx_gene_src_plasmid) { 283 this.pdbx_gene_src_plasmid = pdbx_gene_src_plasmid; 284 } 285 public String getPdbx_gene_src_plasmid_name() { 286 return pdbx_gene_src_plasmid_name; 287 } 288 public void setPdbx_gene_src_plasmid_name(String pdbx_gene_src_plasmid_name) { 289 this.pdbx_gene_src_plasmid_name = pdbx_gene_src_plasmid_name; 290 } 291 public String getPdbx_gene_src_scientific_name() { 292 return pdbx_gene_src_scientific_name; 293 } 294 public void setPdbx_gene_src_scientific_name( 295 String pdbx_gene_src_scientific_name) { 296 this.pdbx_gene_src_scientific_name = pdbx_gene_src_scientific_name; 297 } 298 public String getPdbx_gene_src_variant() { 299 return pdbx_gene_src_variant; 300 } 301 public void setPdbx_gene_src_variant(String pdbx_gene_src_variant) { 302 this.pdbx_gene_src_variant = pdbx_gene_src_variant; 303 } 304 public String getPdbx_host_org_atcc() { 305 return pdbx_host_org_atcc; 306 } 307 public void setPdbx_host_org_atcc(String pdbx_host_org_atcc) { 308 this.pdbx_host_org_atcc = pdbx_host_org_atcc; 309 } 310 public String getPdbx_host_org_cell() { 311 return pdbx_host_org_cell; 312 } 313 public void setPdbx_host_org_cell(String pdbx_host_org_cell) { 314 this.pdbx_host_org_cell = pdbx_host_org_cell; 315 } 316 public String getPdbx_host_org_cell_line() { 317 return pdbx_host_org_cell_line; 318 } 319 public void setPdbx_host_org_cell_line(String pdbx_host_org_cell_line) { 320 this.pdbx_host_org_cell_line = pdbx_host_org_cell_line; 321 } 322 public String getPdbx_host_org_cellular_location() { 323 return pdbx_host_org_cellular_location; 324 } 325 public void setPdbx_host_org_cellular_location( 326 String pdbx_host_org_cellular_location) { 327 this.pdbx_host_org_cellular_location = pdbx_host_org_cellular_location; 328 } 329 public String getPdbx_host_org_culture_collection() { 330 return pdbx_host_org_culture_collection; 331 } 332 public void setPdbx_host_org_culture_collection( 333 String pdbx_host_org_culture_collection) { 334 this.pdbx_host_org_culture_collection = pdbx_host_org_culture_collection; 335 } 336 public String getPdbx_host_org_gene() { 337 return pdbx_host_org_gene; 338 } 339 public void setPdbx_host_org_gene(String pdbx_host_org_gene) { 340 this.pdbx_host_org_gene = pdbx_host_org_gene; 341 } 342 public String getPdbx_host_org_ncbi_taxonomy_id() { 343 return pdbx_host_org_ncbi_taxonomy_id; 344 } 345 public void setPdbx_host_org_ncbi_taxonomy_id( 346 String pdbx_host_org_ncbi_taxonomy_id) { 347 this.pdbx_host_org_ncbi_taxonomy_id = pdbx_host_org_ncbi_taxonomy_id; 348 } 349 public String getPdbx_host_org_organ() { 350 return pdbx_host_org_organ; 351 } 352 public void setPdbx_host_org_organ(String pdbx_host_org_organ) { 353 this.pdbx_host_org_organ = pdbx_host_org_organ; 354 } 355 public String getPdbx_host_org_organelle() { 356 return pdbx_host_org_organelle; 357 } 358 public void setPdbx_host_org_organelle(String pdbx_host_org_organelle) { 359 this.pdbx_host_org_organelle = pdbx_host_org_organelle; 360 } 361 public String getPdbx_host_org_scientific_name() { 362 return pdbx_host_org_scientific_name; 363 } 364 public void setPdbx_host_org_scientific_name( 365 String pdbx_host_org_scientific_name) { 366 this.pdbx_host_org_scientific_name = pdbx_host_org_scientific_name; 367 } 368 public String getPdbx_host_org_strain() { 369 return pdbx_host_org_strain; 370 } 371 public void setPdbx_host_org_strain(String pdbx_host_org_strain) { 372 this.pdbx_host_org_strain = pdbx_host_org_strain; 373 } 374 public String getPdbx_host_org_tissue() { 375 return pdbx_host_org_tissue; 376 } 377 public void setPdbx_host_org_tissue(String pdbx_host_org_tissue) { 378 this.pdbx_host_org_tissue = pdbx_host_org_tissue; 379 } 380 public String getPdbx_host_org_tissue_fraction() { 381 return pdbx_host_org_tissue_fraction; 382 } 383 public void setPdbx_host_org_tissue_fraction( 384 String pdbx_host_org_tissue_fraction) { 385 this.pdbx_host_org_tissue_fraction = pdbx_host_org_tissue_fraction; 386 } 387 public String getPdbx_host_org_variant() { 388 return pdbx_host_org_variant; 389 } 390 public void setPdbx_host_org_variant(String pdbx_host_org_variant) { 391 this.pdbx_host_org_variant = pdbx_host_org_variant; 392 } 393 public String getPdbx_host_org_vector() { 394 return pdbx_host_org_vector; 395 } 396 public void setPdbx_host_org_vector(String pdbx_host_org_vector) { 397 this.pdbx_host_org_vector = pdbx_host_org_vector; 398 } 399 public String getPdbx_host_org_vector_type() { 400 return pdbx_host_org_vector_type; 401 } 402 public void setPdbx_host_org_vector_type(String pdbx_host_org_vector_type) { 403 this.pdbx_host_org_vector_type = pdbx_host_org_vector_type; 404 } 405 public String getPlasmid_details() { 406 return plasmid_details; 407 } 408 public void setPlasmid_details(String plasmid_details) { 409 this.plasmid_details = plasmid_details; 410 } 411 public String getPlasmid_name() { 412 return plasmid_name; 413 } 414 public void setPlasmid_name(String plasmid_name) { 415 this.plasmid_name = plasmid_name; 416 } 417 public String getStart_construct_id() { 418 return start_construct_id; 419 } 420 public void setStart_construct_id(String start_construct_id) { 421 this.start_construct_id = start_construct_id; 422 } 423 424 425 426 427}