001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do t have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * created at Aug 12, 2013 021 * Author: Andreas Prlic 022 */ 023 024package org.biojava.nbio.structure.io.mmcif.model; 025 026/** Data items in the ENTITY_SRC_NAT category record details of 027 the source from which the entity was obtained in cases 028 where the entity was isolated directly from a natural tissue. 029 */ 030public class EntitySrcNat { 031 String common_name ; 032 String details ; 033 String entity_id ; 034 String genus ; 035 String pdbx_atcc ; 036 String pdbx_cell ; 037 String pdbx_cell_line ; 038 String pdbx_cellular_location; 039 String pdbx_fragment ; 040 String pdbx_ncbi_taxonomy_id; 041 String pdbx_organ ; 042 String pdbx_organelle; 043 String pdbx_organism_scientific; 044 String pdbx_plasmid_details ; 045 String pdbx_plasmid_name ; 046 String pdbx_secretion ; 047 String pdbx_variant ; 048 String pdbx_src_id; 049 String pdbx_alt_source_flag; 050 String pdbx_beg_seq_num; 051 String pdbx_end_seq_num; 052 String pdbx_leaving_atom_flag; 053 String species ; 054 String strain ; 055 String tissue ; 056 String tissue_fraction; 057 058 public String getCommon_name() { 059 return common_name; 060 } 061 public void setCommon_name(String common_name) { 062 this.common_name = common_name; 063 } 064 public String getDetails() { 065 return details; 066 } 067 public void setDetails(String details) { 068 this.details = details; 069 } 070 public String getEntity_id() { 071 return entity_id; 072 } 073 public void setEntity_id(String entity_id) { 074 this.entity_id = entity_id; 075 } 076 public String getGenus() { 077 return genus; 078 } 079 public void setGenus(String genus) { 080 this.genus = genus; 081 } 082 public String getPdbx_atcc() { 083 return pdbx_atcc; 084 } 085 public void setPdbx_atcc(String pdbx_atcc) { 086 this.pdbx_atcc = pdbx_atcc; 087 } 088 public String getPdbx_cell() { 089 return pdbx_cell; 090 } 091 public void setPdbx_cell(String pdbx_cell) { 092 this.pdbx_cell = pdbx_cell; 093 } 094 public String getPdbx_cell_line() { 095 return pdbx_cell_line; 096 } 097 public void setPdbx_cell_line(String pdbx_cell_line) { 098 this.pdbx_cell_line = pdbx_cell_line; 099 } 100 public String getPdbx_cellular_location() { 101 return pdbx_cellular_location; 102 } 103 public void setPdbx_cellular_location(String pdbx_cellular_location) { 104 this.pdbx_cellular_location = pdbx_cellular_location; 105 } 106 public String getPdbx_fragment() { 107 return pdbx_fragment; 108 } 109 public void setPdbx_fragment(String pdbx_fragment) { 110 this.pdbx_fragment = pdbx_fragment; 111 } 112 public String getPdbx_ncbi_taxonomy_id() { 113 return pdbx_ncbi_taxonomy_id; 114 } 115 public void setPdbx_ncbi_taxonomy_id(String pdbx_ncbi_taxonomy_id) { 116 this.pdbx_ncbi_taxonomy_id = pdbx_ncbi_taxonomy_id; 117 } 118 public String getPdbx_organ() { 119 return pdbx_organ; 120 } 121 public void setPdbx_organ(String pdbx_organ) { 122 this.pdbx_organ = pdbx_organ; 123 } 124 public String getPdbx_organelle() { 125 return pdbx_organelle; 126 } 127 public void setPdbx_organelle(String pdbx_organelle) { 128 this.pdbx_organelle = pdbx_organelle; 129 } 130 public String getPdbx_organism_scientific() { 131 return pdbx_organism_scientific; 132 } 133 public void setPdbx_organism_scientific(String pdbx_organism_scientific) { 134 this.pdbx_organism_scientific = pdbx_organism_scientific; 135 } 136 public String getPdbx_plasmid_details() { 137 return pdbx_plasmid_details; 138 } 139 public void setPdbx_plasmid_details(String pdbx_plasmid_details) { 140 this.pdbx_plasmid_details = pdbx_plasmid_details; 141 } 142 public String getPdbx_plasmid_name() { 143 return pdbx_plasmid_name; 144 } 145 public void setPdbx_plasmid_name(String pdbx_plasmid_name) { 146 this.pdbx_plasmid_name = pdbx_plasmid_name; 147 } 148 public String getPdbx_secretion() { 149 return pdbx_secretion; 150 } 151 public void setPdbx_secretion(String pdbx_secretion) { 152 this.pdbx_secretion = pdbx_secretion; 153 } 154 public String getPdbx_variant() { 155 return pdbx_variant; 156 } 157 public void setPdbx_variant(String pdbx_variant) { 158 this.pdbx_variant = pdbx_variant; 159 } 160 public String getSpecies() { 161 return species; 162 } 163 public void setSpecies(String species) { 164 this.species = species; 165 } 166 public String getStrain() { 167 return strain; 168 } 169 public void setStrain(String strain) { 170 this.strain = strain; 171 } 172 public String getTissue() { 173 return tissue; 174 } 175 public void setTissue(String tissue) { 176 this.tissue = tissue; 177 } 178 public String getTissue_fraction() { 179 return tissue_fraction; 180 } 181 public void setTissue_fraction(String tissue_fraction) { 182 this.tissue_fraction = tissue_fraction; 183 } 184 185 public String getPdbx_src_id() { 186 return pdbx_src_id; 187 } 188 189 public void setPdbx_src_id(String pdbx_src_id) { 190 this.pdbx_src_id = pdbx_src_id; 191 } 192 193 public String getPdbx_alt_source_flag() { 194 return pdbx_alt_source_flag; 195 } 196 197 public void setPdbx_alt_source_flag(String pdbx_alt_source_flag) { 198 this.pdbx_alt_source_flag = pdbx_alt_source_flag; 199 } 200 201 public String getPdbx_beg_seq_num() { 202 return pdbx_beg_seq_num; 203 } 204 205 public void setPdbx_beg_seq_num(String pdbx_beg_seq_num) { 206 this.pdbx_beg_seq_num = pdbx_beg_seq_num; 207 } 208 209 public String getPdbx_end_seq_num() { 210 return pdbx_end_seq_num; 211 } 212 213 public void setPdbx_end_seq_num(String pdbx_end_seq_num) { 214 this.pdbx_end_seq_num = pdbx_end_seq_num; 215 } 216 217 public String getPdbx_leaving_atom_flag() { 218 return pdbx_leaving_atom_flag; 219 } 220 221 public void setPdbx_leaving_atom_flag(String pdbx_leaving_atom_flag) { 222 this.pdbx_leaving_atom_flag = pdbx_leaving_atom_flag; 223 } 224}