001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojava.nbio.structure.io.mmcif.model; 022 023import javax.xml.bind.JAXBContext; 024import javax.xml.bind.Marshaller; 025import javax.xml.bind.Unmarshaller; 026import javax.xml.bind.annotation.XmlElementWrapper; 027import javax.xml.bind.annotation.XmlRootElement; 028import java.io.ByteArrayInputStream; 029import java.io.ByteArrayOutputStream; 030import java.io.PrintStream; 031import java.util.List; 032 033@XmlRootElement(name="PdbxStructOperListXMLContainer") 034public class PdbxStructOperListXMLContainer { 035 036 037 038 private List<PdbxStructOperList> data ; 039 040 static JAXBContext jaxbContext; 041 static { 042 try { 043 jaxbContext= JAXBContext.newInstance(PdbxStructOperList.class); 044 } catch (Exception e){ 045 e.printStackTrace(); 046 } 047 } 048 049 @XmlElementWrapper 050 public List<PdbxStructOperList> getPdbxStructOperLists(){ 051 return data; 052 053 } 054 055 public void setPdbxStructOperLists(List<PdbxStructOperList> d){ 056 data = d; 057 } 058 059 public String toXML(){ 060 061 ByteArrayOutputStream baos = new ByteArrayOutputStream(); 062 063 PrintStream ps = new PrintStream(baos); 064 065 try { 066 067 Marshaller m = jaxbContext.createMarshaller(); 068 069 m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE); 070 071 m.marshal( this, ps); 072 073 074 } catch (Exception e){ 075 e.printStackTrace(); 076 } 077 078 return baos.toString(); 079 080 } 081 082 public static PdbxStructOperListXMLContainer fromXML(String xml){ 083 084 PdbxStructOperListXMLContainer job = null; 085 086 try { 087 088 Unmarshaller un = jaxbContext.createUnmarshaller(); 089 090 ByteArrayInputStream bais = new ByteArrayInputStream(xml.getBytes()); 091 092 job = (PdbxStructOperListXMLContainer) un.unmarshal(bais); 093 094 } catch (Exception e){ 095 e.printStackTrace(); 096 } 097 098 return job; 099 } 100 101}