001/**
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on Aug 30, 2011
021 * Created by Andreas Prlic
022 *
023 * @since 3.0.2
024 */
025package org.biojava.nbio.structure.scop.server;
026
027import org.biojava.nbio.structure.scop.ScopDescription;
028
029import javax.xml.bind.JAXBContext;
030import javax.xml.bind.Marshaller;
031import javax.xml.bind.Unmarshaller;
032import javax.xml.bind.annotation.XmlAccessType;
033import javax.xml.bind.annotation.XmlAccessorType;
034import javax.xml.bind.annotation.XmlRootElement;
035import java.io.ByteArrayInputStream;
036import java.io.ByteArrayOutputStream;
037import java.io.PrintStream;
038import java.io.Serializable;
039import java.util.List;
040
041
042
043@XmlRootElement(name = "ScopDescriptions", namespace ="http://source.rcsb.org")
044@XmlAccessorType(XmlAccessType.PUBLIC_MEMBER)
045public class ScopDescriptions implements Serializable{
046
047
048        private static final long serialVersionUID = 4924350548761431852L;
049
050        static JAXBContext jaxbContext;
051        static {
052                try {
053                        jaxbContext= JAXBContext.newInstance(ScopDescriptions.class);
054                } catch (Exception e){
055                        throw new RuntimeException("Could not initialize JAXB context for " + ScopDescriptions.class, e);
056                }
057        }
058
059
060        List<ScopDescription> scopDescriptions;
061
062        public List<ScopDescription> getScopDescription() {
063                return scopDescriptions;
064        }
065
066        public void setScopDescription(List<ScopDescription> descriptions) {
067                this.scopDescriptions = descriptions;
068        }
069
070        public  String toXML(){
071
072                ByteArrayOutputStream baos = new ByteArrayOutputStream();
073
074                PrintStream ps = new PrintStream(baos);
075
076                try {
077
078                        Marshaller m = jaxbContext.createMarshaller();
079
080                        m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
081
082                        m.marshal( this, ps);
083
084
085                } catch (Exception e){
086                        throw new RuntimeException("Could not convert " + getClass() + " to XML", e);
087                }
088
089                return baos.toString();
090
091        }
092
093        public static ScopDescriptions fromXML(String xml){
094
095                ScopDescriptions job = null;
096
097                try {
098
099                        Unmarshaller un = jaxbContext.createUnmarshaller();
100
101                        ByteArrayInputStream bais = new ByteArrayInputStream(xml.getBytes());
102
103                        job = (ScopDescriptions) un.unmarshal(bais);
104
105                } catch (Exception e){
106                        throw new RuntimeException("Could not parse " + ScopDescriptions.class + " from XML", e);
107                }
108
109                return job;
110        }
111
112
113}