001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 */ 021package org.biojava.nbio.structure.symmetry.internal; 022 023import org.biojava.nbio.structure.Atom; 024import org.biojava.nbio.structure.align.model.AFPChain; 025 026/** 027 * A method to decide the order of symmetry (number of subunits) 028 * given a structure self-alignment, calculated by CE-Symm. 029 * 030 * @author dmyersturnbull 031 * @since 4.2.0 032 * 033 */ 034public interface OrderDetector { 035 036 public int calculateOrder(AFPChain afpChain, Atom[] ca) 037 throws RefinerFailedException; 038 039}