001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 */
021package org.biojava.nbio.ws.hmmer;
022
023import org.biojava.nbio.core.sequence.ProteinSequence;
024
025import java.io.IOException;
026import java.util.SortedSet;
027
028/** Interface for performing Hmmscans on sequences.
029 *
030 * @author Andreas Prlic
031 * @since 3.0.3
032 */
033public interface HmmerScan {
034
035        public  SortedSet<HmmerResult> scan(ProteinSequence sequence) throws IOException;
036
037}