Package org.biojava.nbio.aaproperties.profeat.convertor

Class Convert2SecondaryStructure

java.lang.Object

org.biojava.nbio.aaproperties.profeat.convertor.Convertor

org.biojava.nbio.aaproperties.profeat.convertor.Convert2SecondaryStructure

public class Convert2SecondaryStructure
extends Convertor

Field Summary

Fields inherited from class org.biojava.nbio.aaproperties.profeat.convertor.Convertor

group1, group2, group3, unknownGroup

Constructor Summary

Constructors

Constructor	Description
Convert2SecondaryStructure()

Method Summary

Modifier and Type	Method	Description
char	convert(char c)	Class for the conversion of protein sequence into secondary structure
String	getAttribute()	Return the attribute of the grouping
String[]	getGrouping()	Returns the groupings of the attribute

Methods inherited from class org.biojava.nbio.aaproperties.profeat.convertor.Convertor

convert

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Convert2SecondaryStructure

public Convert2SecondaryStructure()

Method Detail

convert

public char convert(char c)

Class for the conversion of protein sequence into secondary structure

Specified by:

convert in class Convertor

Parameters:

c - an amino acid character preferably of non-ambiguous characters

Returns:

its grouping

getGrouping

public String[] getGrouping()

Description copied from class: Convertor

Returns the groupings of the attribute

Specified by:

getGrouping in class Convertor

Returns:

the groupings of the attribute

getAttribute

public String getAttribute()

Description copied from class: Convertor

Return the attribute of the grouping

Specified by:

getAttribute in class Convertor

Returns:

the attribute of the grouping