Class CytobandParser
- java.lang.Object
-
- org.biojava.nbio.genome.parsers.cytoband.CytobandParser
-
public class CytobandParser extends Object
Parses the cytoband (karyotype) file from UCSC.
-
-
Field Summary
Fields Modifier and Type Field Description static String
DEFAULT_LOCATION
-
Constructor Summary
Constructors Constructor Description CytobandParser()
-
Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description SortedSet<Cytoband>
getAllCytobands(InputStream instream)
SortedSet<Cytoband>
getAllCytobands(URL u)
static void
main(String[] args)
-
-
-
Field Detail
-
DEFAULT_LOCATION
public static final String DEFAULT_LOCATION
- See Also:
- Constant Field Values
-
-
Constructor Detail
-
CytobandParser
public CytobandParser()
-
-
Method Detail
-
getAllCytobands
public SortedSet<Cytoband> getAllCytobands(URL u) throws IOException
- Throws:
IOException
-
getAllCytobands
public SortedSet<Cytoband> getAllCytobands(InputStream instream) throws IOException
- Throws:
IOException
-
-