Uses of Class
org.biojava.nbio.protmod.structure.StructureGroup

Packages that use StructureGroup

Package	Description
org.biojava.nbio.protmod.io
org.biojava.nbio.protmod.structure

Uses of StructureGroup in org.biojava.nbio.protmod.io

Methods in org.biojava.nbio.protmod.io that return StructureGroup

Modifier and Type	Method	Description
static StructureGroup	StructureGroupXMLConverter.fromXML(Node n)

Methods in org.biojava.nbio.protmod.io with parameters of type StructureGroup

Modifier and Type	Method	Description
static void	StructureGroupXMLConverter.toXML(StructureGroup group, PrettyXMLWriter xml)

Uses of StructureGroup in org.biojava.nbio.protmod.structure

Methods in org.biojava.nbio.protmod.structure that return StructureGroup

Modifier and Type	Method	Description
StructureGroup	StructureAtom.getGroup()
static StructureGroup	StructureUtil.getStructureGroup(Group group, boolean isAminoAcid)

Methods in org.biojava.nbio.protmod.structure that return types with arguments of type StructureGroup

Modifier and Type	Method	Description
Set<StructureGroup>	ModifiedCompound.getGroups()
Set<StructureGroup>	ModifiedCompound.getGroups(boolean isAminoAcid)
Set<StructureGroup>	ModifiedCompoundImpl.getGroups()
Set<StructureGroup>	ModifiedCompoundImpl.getGroups(boolean isAminoAcid)
Set<StructureGroup>	ProteinModificationIdentifier.getUnidentifiableModifiedResidues()

Methods in org.biojava.nbio.protmod.structure with parameters of type StructureGroup

Modifier and Type	Method	Description
int	StructureGroup.compareTo(StructureGroup aGroup)

Method parameters in org.biojava.nbio.protmod.structure with type arguments of type StructureGroup

Modifier and Type	Method	Description
void	ModifiedCompound.setGroups(Set<StructureGroup> groups)
void	ModifiedCompoundImpl.setGroups(Set<StructureGroup> groups)

Constructors in org.biojava.nbio.protmod.structure with parameters of type StructureGroup

Constructor	Description
ModifiedCompoundImpl(ProteinModification modification, StructureGroup modifiedResidue)	Create a ModifiedCompoundImpl that has only one involved component.
StructureAtom(StructureGroup group, String atomName)