StructureAlignmentFactory (biojava 6.0.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.StructureAlignmentFactory

public class StructureAlignmentFactory
extends Object

Constructor Summary

Constructors
Constructor Description

StructureAlignmentFactory()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`addAlgorithm(StructureAlignment alg)`	Adds a new StructureAlignment algorithm to the list.
`static void`	`clearAlgorithms()`	Removes all algorithms from the list
`static StructureAlignment`	`getAlgorithm(String name)`
`static String[]`	`getAllAlgorithmNames()`
`static StructureAlignment[]`	`getAllAlgorithms()`
`static boolean`	`removeAlgorithm(String name)`	Removes the specified algorithm from the list of options

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - StructureAlignmentFactory
```
public StructureAlignmentFactory()
```
- Method Detail
  - addAlgorithm
```
public static void addAlgorithm(StructureAlignment alg)
```
    Adds a new StructureAlignment algorithm to the list. Only one instance is stored for each algorithmName, so it is possible that a different instance may be returned by getAlgorithm(alg.getAlgorithmName())
    
    Parameters:
    
    alg - the alignment algorithm
  - removeAlgorithm
```
public static boolean removeAlgorithm(String name)
```
    Removes the specified algorithm from the list of options
    
    Parameters:
    
    name - the name of the algorithm to remove
    
    Returns:
    
    true if the specified algorithm was found and removed
  - clearAlgorithms
```
public static void clearAlgorithms()
```
    Removes all algorithms from the list
  - getAlgorithm
```
public static StructureAlignment getAlgorithm(String name)
                                       throws StructureException
```
    Throws:
    
    StructureException
  - getAllAlgorithms
```
public static StructureAlignment[] getAllAlgorithms()
```
  - getAllAlgorithmNames
```
public static String[] getAllAlgorithmNames()
```