AFP (biojava 6.0.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.model.AFP

All Implemented Interfaces:

Serializable
```
public class AFP
extends Object
implements Serializable
```
A class to represent a FATCAT aligned fragment pair (AFP)

Author:

Andreas Prlic

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

AFP()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getFragLen()`
`long`	`getId()`
`Matrix`	`getM()`
`int`	`getP1()`
`int`	`getP2()`
`double`	`getRmsd()`
`double`	`getScore()`
`double[]`	`getT()`
`void`	`setFragLen(int fragLen)`
`void`	`setId(long id)`
`void`	`setM(Matrix m)`
`void`	`setP1(int p1)`
`void`	`setP2(int p2)`
`void`	`setRmsd(double rmsd)`
`void`	`setScore(double score)`
`void`	`setT(double[] t)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail
- AFP
```
public AFP()
```

Method Detail

toString
```
public String toString()
```
Overrides:

toString in class Object

getId
```
public long getId()
```

setId
```
public void setId(long id)
```

getP1
```
public int getP1()
```

setP1
```
public void setP1(int p1)
```

getP2
```
public int getP2()
```

setP2
```
public void setP2(int p2)
```

getFragLen
```
public int getFragLen()
```

setFragLen

public void setFragLen(int fragLen)

getRmsd
```
public double getRmsd()
```

setRmsd
```
public void setRmsd(double rmsd)
```

getM
```
public Matrix getM()
```

setM
```
public void setM(Matrix m)
```

getT
```
public double[] getT()
```

setT
```
public void setT(double[] t)
```

getScore
```
public double getScore()
```

setScore

public void setScore(double score)