Uses of Class org.biojava.nbio.structure.basepairs.BasePairParameters (biojava 6.0.0 API)

Packages that use BasePairParameters
Package Description

org.biojava.nbio.structure.basepairs

Uses of BasePairParameters in org.biojava.nbio.structure.basepairs

Subclasses of BasePairParameters in org.biojava.nbio.structure.basepairs
Modifier and Type	Class	Description
`class`	`MismatchedBasePairParameters`	This class allows for finding inter-strand base pairs that are not necessarily canonical Watson-Crick pairs.
`class`	`TertiaryBasePairParameters`	This class also finds the base pairing and base-pair step parameters but has a broader definition of a base pair so that non-canonical-WC base pairs will be detected and reported.

Methods in org.biojava.nbio.structure.basepairs that return BasePairParameters
Modifier and Type	Method	Description
`BasePairParameters`	BasePairParameters.`analyze()`	This method is the main function call to extract all step parameters, pairing parameters, and sequence information from the Structure object provided to the constructor.