Uses of Interface
org.biojava.nbio.structure.Bond
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Packages that use Bond Package Description org.biojava.nbio.structure org.biojava.nbio.structure.io Input and Output of Structures -
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Uses of Bond in org.biojava.nbio.structure
Classes in org.biojava.nbio.structure that implement Bond Modifier and Type Class Description class
BondImpl
A simple bond -- it stores information about two atoms as well as information about its bond order.Methods in org.biojava.nbio.structure that return types with arguments of type Bond Modifier and Type Method Description List<Bond>
Atom. getBonds()
Get allBond
s this atom is part of.List<Bond>
AtomImpl. getBonds()
Get allBond
s this atom is part of.List<Bond>
Structure. getSSBonds()
Get the list of disulfide Bonds as they have been defined in the PDB filesList<Bond>
StructureImpl. getSSBonds()
Get the list of disulfide Bonds as they have been defined in the PDB filesMethods in org.biojava.nbio.structure with parameters of type Bond Modifier and Type Method Description void
Atom. addBond(Bond bond)
Add a bondvoid
AtomImpl. addBond(Bond bond)
void
Structure. addSSBond(Bond ssbond)
Add a single disulfide Bond to this structurevoid
StructureImpl. addSSBond(Bond ssbond)
Adds a single disulfide Bond to this structureMethod parameters in org.biojava.nbio.structure with type arguments of type Bond Modifier and Type Method Description void
Atom. setBonds(List<Bond> bonds)
Sets the bondsvoid
AtomImpl. setBonds(List<Bond> bonds)
Sets the bondsvoid
Structure. setSSBonds(List<Bond> ssbonds)
Set the list of SSBonds for this structurevoid
StructureImpl. setSSBonds(List<Bond> ssbonds)
Set the list of SSBonds for this structure -
Uses of Bond in org.biojava.nbio.structure.io
Methods in org.biojava.nbio.structure.io with parameters of type Bond Modifier and Type Method Description static SSBondImpl
SSBondImpl. toSsBond(Bond bond)
Converts the givenBond
object into aSSBondImpl
.Method parameters in org.biojava.nbio.structure.io with type arguments of type Bond Modifier and Type Method Description static List<SSBondImpl>
SSBondImpl. getSsBondListFromBondList(List<Bond> bonds)
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