Uses of Class
org.biojava.nbio.structure.domain.pdp.PDPDistanceMatrix

Packages that use PDPDistanceMatrix

Package	Description
org.biojava.nbio.structure.domain.pdp

Uses of PDPDistanceMatrix in org.biojava.nbio.structure.domain.pdp

Methods in org.biojava.nbio.structure.domain.pdp that return PDPDistanceMatrix

Modifier and Type	Method	Description
PDPDistanceMatrix	GetDistanceMatrix.getDistanceMatrix(Atom[] protein)	A set of Calpha atoms that are representing the protein

Methods in org.biojava.nbio.structure.domain.pdp with parameters of type PDPDistanceMatrix

Modifier and Type	Method	Description
static List<Domain>	ClusterDomains.cluster(List<Domain> domains, PDPDistanceMatrix pdpDistMatrix)
int	Cut.cut(Atom[] ca, Domain dom, CutValues val, int[][] dist, PDPDistanceMatrix pdpMatrix)
void	CutDomain.cutDomain(Domain dom, CutSites cut_sites, PDPDistanceMatrix pdpMatrix)

Constructors in org.biojava.nbio.structure.domain.pdp with parameters of type PDPDistanceMatrix

Constructor	Description
CutDomain(Atom[] ca, PDPDistanceMatrix pdpMatrix)