Uses of Class org.biojava.nbio.survival.data.WorkSheet (biojava 6.0.0 API)

Packages that use WorkSheet
Package	Description
org.biojava.nbio.survival.cox
org.biojava.nbio.survival.data
org.biojava.nbio.survival.kaplanmeier.figure
org.biojava.nbio.survival.kaplanmeier.metadata

Uses of WorkSheet in org.biojava.nbio.survival.cox

Methods in org.biojava.nbio.survival.cox with parameters of type WorkSheet
Modifier and Type	Method	Description
`static CoxInfo`	CoxHelper.`process(WorkSheet worksheet, String timeColumn, String statusColumn, String weightColumn, String strataColumn, String clusterColumn, ArrayList<String> variables, boolean useStrata, boolean useWeights)`

Uses of WorkSheet in org.biojava.nbio.survival.data

Methods in org.biojava.nbio.survival.data that return WorkSheet
Modifier and Type	Method	Description
`static WorkSheet`	WorkSheet.`getCopyWorkSheet(WorkSheet copyWorkSheet)`	Create a copy of a worksheet.
`static WorkSheet`	WorkSheet.`getCopyWorkSheetSelectedRows(WorkSheet copyWorkSheet, ArrayList<String> rows)`	Create a copy of a worksheet.
`WorkSheet`	WorkSheet.`getLogScale(double base)`	Get the log scale of this worksheet where a zero value will be set to .1 as Log(0) is undefined
`WorkSheet`	WorkSheet.`getLogScale(double base, double zeroValue)`	Get the log scale of this worksheet
`static WorkSheet`	WorkSheet.`readCSV(File f, char delimiter)`
`static WorkSheet`	WorkSheet.`readCSV(InputStream is, char delimiter)`	Read a CSV/Tab delimited file where you pass in the delimiter
`static WorkSheet`	WorkSheet.`readCSV(String fileName, char delimiter)`	Read a CSV/Tab delimitted file where you pass in the delimiter
`WorkSheet`	WorkSheet.`swapRowAndColumns()`	Swap the row and columns returning a new worksheet
`static WorkSheet`	WorkSheet.`unionWorkSheetsRowJoin(String w1FileName, String w2FileName, char delimitter, boolean secondSheetMetaData)`	Combine two work sheets where you join based on rows.
`static WorkSheet`	WorkSheet.`unionWorkSheetsRowJoin(WorkSheet w1, WorkSheet w2, boolean secondSheetMetaData)`	* Combine two work sheets where you join based on rows.

Methods in org.biojava.nbio.survival.data with parameters of type WorkSheet
Modifier and Type	Method	Description
`void`	WorkSheet.`appendWorkSheetColumns(WorkSheet worksheet)`	Add columns from a second worksheet to be joined by common row.
`void`	WorkSheet.`appendWorkSheetRows(WorkSheet worksheet)`	Add rows from a second worksheet to be joined by common column.
`static WorkSheet`	WorkSheet.`getCopyWorkSheet(WorkSheet copyWorkSheet)`	Create a copy of a worksheet.
`static WorkSheet`	WorkSheet.`getCopyWorkSheetSelectedRows(WorkSheet copyWorkSheet, ArrayList<String> rows)`	Create a copy of a worksheet.
`static WorkSheet`	WorkSheet.`unionWorkSheetsRowJoin(WorkSheet w1, WorkSheet w2, boolean secondSheetMetaData)`	* Combine two work sheets where you join based on rows.

Uses of WorkSheet in org.biojava.nbio.survival.kaplanmeier.figure

Methods in org.biojava.nbio.survival.kaplanmeier.figure with parameters of type WorkSheet
Modifier and Type	Method	Description
`CensorStatus`	CensorStatusSelect.`select(WorkSheet worksheet, String row)`

Uses of WorkSheet in org.biojava.nbio.survival.kaplanmeier.metadata

Methods in org.biojava.nbio.survival.kaplanmeier.metadata with parameters of type WorkSheet
Modifier and Type	Method	Description
`static void`	ClinicalMetaDataOutcome.`process(WorkSheet worksheet, String sensorMapColumn, LinkedHashMap<String,String> censorMap, String timeColumn, Double timeScale, ArrayList<MetaDataInfo> metaDataInfoList)`
`void`	DiscreteQuantizerInterface.`process(WorkSheet worksheet, String column)`
`void`	MeanQuantizer.`process(WorkSheet worksheet, String column)`
`void`	MetaDataInfo.`setDiscreteValues(WorkSheet worksheet)`