001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on 01-21-2010
021 */
022package org.biojava.nbio.core.sequence.features;
023
024import org.biojava.nbio.core.sequence.template.AbstractSequence;
025import org.biojava.nbio.core.sequence.template.Compound;
026
027import java.util.ArrayList;
028import java.util.List;
029
030/**
031 * It is common to have a numerical value or values associated with a feature. This can then
032 * be used in heat maps or other visual indicators when viewing a sequence. Multiple quantities
033 * could represent a time corse study and display a color gradient
034 * @author Scooter Willis <willishf at gmail dot com>
035 */
036public class QuantityFeature<S extends AbstractSequence<C>, C extends Compound> extends AbstractFeature<S, C> {
037
038        private List<Number> quantities = new ArrayList<Number>();
039
040        /**
041         *
042         * @param type
043         * @param source
044         */
045        public QuantityFeature(String type, String source) {
046                super(type, source);
047        }
048
049        /**
050         *
051         * @param value
052         */
053        public void addQuantity(Number value) {
054                quantities.add(value);
055        }
056
057        /**
058         * @return the quantities
059         */
060        public List<Number> getQuantities() {
061                return quantities;
062        }
063
064        /**
065         * @param quantities the quantities to set
066         */
067        public void setQuantities(List<Number> quantities) {
068                this.quantities = quantities;
069        }
070}