001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 * Created on 01-21-2010
021 */
022package org.biojava.nbio.core.sequence.location;
023
024import org.biojava.nbio.core.sequence.AccessionID;
025import org.biojava.nbio.core.sequence.Strand;
026import org.biojava.nbio.core.sequence.location.template.AbstractLocation;
027import org.biojava.nbio.core.sequence.location.template.Location;
028import org.biojava.nbio.core.sequence.location.template.Point;
029
030import java.util.ArrayList;
031import java.util.Arrays;
032import java.util.Collections;
033import java.util.List;
034
035/**
036 * Very basic implementation of the Location interface which defines a series
037 * of simple constructors.
038 *
039 * @author ayates
040 * @author Paolo Pavan
041 */
042public class SimpleLocation extends AbstractLocation {
043
044        private static final List<Location> EMPTY_LOCS = Collections.emptyList();
045
046        public SimpleLocation(int start, int end) {
047                this(new SimplePoint(start), new SimplePoint(end));
048        }
049
050        public SimpleLocation(Point start, Point end) {
051                this(start, end, Strand.POSITIVE);
052        }
053
054        public SimpleLocation(int start, int end, Strand strand) {
055                this(new SimplePoint(start), new SimplePoint(end), strand);
056        }
057
058        public SimpleLocation(int start, int end, Strand strand, List<Location> subLocations) {
059                this(new SimplePoint(start), new SimplePoint(end), strand, subLocations);
060        }
061
062        public SimpleLocation(Point start, Point end, Strand strand) {
063
064                super(start, end, strand, false, false, new ArrayList<Location>());
065        }
066
067        public SimpleLocation(Point start, Point end, Strand strand, AccessionID accession) {
068                super(start, end, strand, false, false, accession, EMPTY_LOCS);
069        }
070
071        public SimpleLocation(Point start, Point end, Strand strand, boolean betweenCompounds, AccessionID accession) {
072                super(start, end, strand, false, betweenCompounds, accession, EMPTY_LOCS);
073        }
074
075        public SimpleLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenBases) {
076                super(start, end, strand, circular, betweenBases, EMPTY_LOCS);
077        }
078
079        public SimpleLocation(int start, int end, Strand strand, Location... subLocations) {
080                this(new SimplePoint(start), new SimplePoint(end), strand, subLocations);
081        }
082
083        public SimpleLocation(Point start, Point end, Strand strand, Location... subLocations) {
084                super(start, end, strand, false, false, Arrays.asList(subLocations));
085        }
086
087        public SimpleLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations) {
088                super(start, end, strand, circular, false, Arrays.asList(subLocations));
089        }
090
091        public SimpleLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations) {
092                super(start, end, strand, circular, false, subLocations);
093        }
094
095        public SimpleLocation(Point start, Point end, Strand strand, List<Location> subLocations) {
096                super(start, end, strand, false, false, subLocations);
097        }
098
099        public SimpleLocation(Point start, Point end, Strand strand, boolean circular, boolean betweenBases, List<Location> subLocations) {
100                super(start, end, strand, circular, betweenBases, subLocations);
101        }
102}