Interface AAIndexProvider
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- All Known Implementing Classes:
DefaultAAIndexProvider
public interface AAIndexProvider
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description SubstitutionMatrix<AminoAcidCompound>
getMatrix(String matrixName)
Gets a substitution matrix by its name.
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Method Detail
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getMatrix
SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
Gets a substitution matrix by its name. The matrices are defined in src/main/resources/matrices/AAINDEX.txt- Parameters:
matrixName
-- Returns:
- The @{code}SubstitutionMatrix or null if not exists
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