Package org.biojava.nbio.core.sequence.features

Class QuantityFeature<S extends AbstractSequence<C>,C extends Compound>

java.lang.Object

org.biojava.nbio.core.sequence.features.AbstractFeature<S,C>

org.biojava.nbio.core.sequence.features.QuantityFeature<S,C>

All Implemented Interfaces:

FeatureInterface<S,C>

public class QuantityFeature<S extends AbstractSequence<C>,C extends Compound>
extends AbstractFeature<S,C>

It is common to have a numerical value or values associated with a feature. This can then be used in heat maps or other visual indicators when viewing a sequence. Multiple quantities could represent a time corse study and display a color gradient

Author:

Scooter Willis

Field Summary

Fields inherited from class org.biojava.nbio.core.sequence.features.AbstractFeature

LENGTH, LOCATION_LENGTH, TYPE

Constructor Summary

Constructors

Constructor	Description
QuantityFeature(String type, String source)

Method Summary

Modifier and Type	Method	Description
void	addQuantity(Number value)
List<Number>	getQuantities()
void	setQuantities(List<Number> quantities)

Methods inherited from class org.biojava.nbio.core.sequence.features.AbstractFeature

addQualifier, getChildrenFeatures, getDescription, getLocations, getParentFeature, getQualifiers, getShortDescription, getSource, getType, getUserObject, setChildrenFeatures, setDescription, setLocation, setParentFeature, setQualifiers, setShortDescription, setSource, setType, setUserObject

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QuantityFeature

public QuantityFeature(String type,
                       String source)

Parameters:

type -

source -

Method Detail

addQuantity

public void addQuantity(Number value)

Parameters:

value -

getQuantities

public List<Number> getQuantities()

Returns:

the quantities

setQuantities

public void setQuantities(List<Number> quantities)

Parameters:

quantities - the quantities to set