| FuzzyPoint |
Implementation for resolving fuzzy locations.
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| InsdcLocations |
A collection of locations which are used whenever we work with INSDC; some
of which could be deprecated (from INSDC's point of view) yet appear
in records.
|
| InsdcLocations.BondLocation |
Used to represent bond locations equivalent to bond(7,8) or bond(7).
|
| InsdcLocations.GroupLocation |
Deprecated in INSDC yet still appears; equivalent to the order()
directive except no 5' to 3' ordering is defined.
|
| InsdcLocations.OneOfLocation |
Deprecated in INSDC; refers to a set of locations of which one
location could be valid e.g. one-of(location, location, location).
|
| InsdcLocations.OrderLocation |
Used to describe a 5' to 3' ordering but no firm assurance it is correct
|
| InsdcParser |
Parser for working with INSDC style locations.
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| LocationHelper |
Helper methods for use with the Location classes.
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| SequenceLocation<S extends AbstractSequence<C>,C extends Compound> |
A location in a sequence that keeps a reference to its parent sequence
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| SimpleLocation |
Very basic implementation of the Location interface which defines a series
of simple constructors.
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| SimplePoint |
Basic implementation of the Point interface.
|