Package org.biojava.nbio.protmod
Interface ProteinModification
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- All Known Implementing Classes:
ProteinModificationImpl
public interface ProteinModification
This interface defines information about a specific protein modification.- Since:
- 3.0
- Author:
- Jianjiong Gao
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description ModificationCategory
getCategory()
ModificationCondition
getCondition()
String
getDescription()
String
getFormula()
String
getId()
Set<String>
getKeywords()
ModificationOccurrenceType
getOccurrenceType()
String
getPdbccId()
String
getPdbccName()
String
getPsimodId()
String
getPsimodName()
String
getResidId()
String
getResidName()
String
getSystematicName()
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Method Detail
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getPdbccId
String getPdbccId()
- Returns:
- Protein Data Bank Chemical Component ID.
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getPdbccName
String getPdbccName()
- Returns:
- Protein Data Bank Chemical Component name.
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getResidId
String getResidId()
- Returns:
- RESID ID.
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getResidName
String getResidName()
- Returns:
- RESID name.
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getPsimodId
String getPsimodId()
- Returns:
- PSI-MOD ID.
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getPsimodName
String getPsimodName()
- Returns:
- PSI-MOD name.
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getSystematicName
String getSystematicName()
- Returns:
- Systematic name.
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getDescription
String getDescription()
- Returns:
- Description.
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getKeywords
Set<String> getKeywords()
- Returns:
- a set of keywords.
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getCondition
ModificationCondition getCondition()
- Returns:
ModificationCondition
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getFormula
String getFormula()
- Returns:
- formula of the modified residue.
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getCategory
ModificationCategory getCategory()
- Returns:
- the modification category.
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getOccurrenceType
ModificationOccurrenceType getOccurrenceType()
- Returns:
- the modification occurrence type.
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