AligNPE (biojava 6.1.0 API)

java.lang.Object
- org.biojava.nbio.structure.align.pairwise.AligNPE

```
public class AligNPE
extends Object
```

Constructor Summary

Constructors
Constructor Description

AligNPE()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static Alignable`	`align_NPE(Matrix sim, StrucAligParameters params)`	Align without penalizing end-gaps.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - AligNPE
```
public AligNPE()
```
- Method Detail
  - align_NPE
```
public static Alignable align_NPE(Matrix sim,
                                  StrucAligParameters params)
```
    Align without penalizing end-gaps. Return alignment and score
    
    Parameters:
    
    sim - the similarity matrix
    
    params - the structure alignment parameters to be used
    
    Returns:
    
    an Alignable