InterfaceFinder (biojava 6.1.0 API)

java.lang.Object
- org.biojava.nbio.structure.contact.InterfaceFinder

```
public class InterfaceFinder
extends Object
```
A class containing methods to find interfaces in a given structure.

Since:

5.4.0

Author:

Jose Duarte

Field Summary

Fields
Modifier and Type Field Description

static double DEFAULT_CONTACT_CUTOFF

Constructor Summary

Constructors
Constructor Description

InterfaceFinder(Structure structure)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StructureInterfaceList`	`getAllInterfaces()`	Find all inter polymer-chain interfaces in the structure.
`void`	`setCutoff(double cutoff)`	Set the contact distance cutoff.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - DEFAULT_CONTACT_CUTOFF
```
public static final double DEFAULT_CONTACT_CUTOFF
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - InterfaceFinder
```
public InterfaceFinder(Structure structure)
```
- Method Detail
  - setCutoff
```
public void setCutoff(double cutoff)
```
    Set the contact distance cutoff.
    
    Parameters:
    
    cutoff - the distance value in Angstroms
  - getAllInterfaces
```
public StructureInterfaceList getAllInterfaces()
```
    Find all inter polymer-chain interfaces in the structure. Two chains will be considered in contact if at least a pair of atoms (one from each chain) is within the contact cutoff.
    
    Returns:
    
    the list of all interfaces