Uses of Class org.biojava.nbio.structure.contact.BoundingBox (biojava 6.1.0 API)

Packages that use BoundingBox
Package Description

org.biojava.nbio.structure.contact

org.biojava.nbio.structure.xtal

Uses of BoundingBox in org.biojava.nbio.structure.contact

Methods in org.biojava.nbio.structure.contact with parameters of type BoundingBox
Modifier and Type	Method	Description
`void`	Grid.`addAtoms(Atom[] atoms, BoundingBox bounds)`	Adds a set of atoms, subsequent call to `Grid.getIndicesContacts()` or `Grid.getAtomContacts()` will produce the interatomic contacts.
`void`	Grid.`addAtoms(Atom[] iAtoms, BoundingBox icoordbounds, Atom[] jAtoms, BoundingBox jcoordbounds)`	Adds the i and j atoms and fills the grid, passing their bounds (array of size 6 with x,y,z minima and x,y,z maxima) This way the bounds don't need to be recomputed.
`void`	Grid.`addCoords(javax.vecmath.Point3d[] atoms, BoundingBox bounds)`	Adds a set of coordinates, subsequent call to `Grid.getIndicesContacts()` will produce the contacts, i.e. the set of points within distance cutoff.
`void`	Grid.`addCoords(javax.vecmath.Point3d[] iAtoms, BoundingBox icoordbounds, javax.vecmath.Point3d[] jAtoms, BoundingBox jcoordbounds)`	Adds the i and j coordinates and fills the grid, passing their bounds (array of size 6 with x,y,z minima and x,y,z maxima) This way the bounds don't need to be recomputed.
`boolean`	BoundingBox.`overlaps(BoundingBox o, double cutoff)`	Returns true if this bounding box overlaps given one, i.e. they are within one cutoff distance in one of their 3 dimensions.

Constructors in org.biojava.nbio.structure.contact with parameters of type BoundingBox
Constructor	Description
`BoundingBox(BoundingBox bb)`
`BoundingBox(BoundingBox[] boxes)`	Given a set of bounding boxes returns a bounding box that bounds all of them.

Uses of BoundingBox in org.biojava.nbio.structure.xtal

Methods in org.biojava.nbio.structure.xtal that return BoundingBox
Modifier and Type	Method	Description
`BoundingBox`	UnitCellBoundingBox.`getAuBoundingBox(int cellIdx)`	Get the AU BoundingBox for the given cell index (cellIdx=0 would be original AU) The AU BoundingBox is the BoundingBox that bounds all chains belonging to the AU
`BoundingBox`	UnitCellBoundingBox.`getChainBoundingBox(int cellIdx, int chainIdx)`	Get the chain BoundingBox for the given cell index (cellIdx=0 would be original AU) and chain index