Package org.biojava.nbio.structure.io.cif

Interface CifStructureConsumer

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      void consumeAtomSite​(org.rcsb.cif.schema.mm.AtomSite atomSite)
      Consume a particular Cif category.
      void consumeAtomSites​(org.rcsb.cif.schema.mm.AtomSites atomSites)
      Consume a particular Cif category.
      void consumeAuditAuthor​(org.rcsb.cif.schema.mm.AuditAuthor auditAuthor)
      Consume a particular Cif category.
      void consumeCell​(org.rcsb.cif.schema.mm.Cell cell)
      Consume a particular Cif category.
      void consumeChemComp​(org.rcsb.cif.schema.mm.ChemComp chemComp)
      Consume a particular Cif category.
      void consumeChemCompBond​(org.rcsb.cif.schema.mm.ChemCompBond chemCompBond)
      Consume a particular Cif category.
      void consumeDatabasePDBRemark​(org.rcsb.cif.schema.mm.DatabasePDBRemark databasePDBremark)
      Consume a particular Cif category.
      void consumeDatabasePDBRev​(org.rcsb.cif.schema.mm.DatabasePDBRev databasePDBrev)
      Consume a particular Cif category.
      void consumeDatabasePDBRevRecord​(org.rcsb.cif.schema.mm.DatabasePDBRevRecord databasePDBrevRecord)
      Consume a particular Cif category.
      void consumeEm3dReconstruction​(org.rcsb.cif.schema.mm.Em3dReconstruction em3dReconstruction)
      Consume Electron Microscopy 3D reconstruction data
      void consumeEntity​(org.rcsb.cif.schema.mm.Entity entity)
      Consume a particular Cif category.
      void consumeEntityPoly​(org.rcsb.cif.schema.mm.EntityPoly entityPoly)
      Consume a particular Cif category.
      void consumeEntityPolySeq​(org.rcsb.cif.schema.mm.EntityPolySeq entityPolySeq)
      Consume a particular Cif category.
      void consumeEntitySrcGen​(org.rcsb.cif.schema.mm.EntitySrcGen entitySrcGen)
      Consume a particular Cif category.
      void consumeEntitySrcNat​(org.rcsb.cif.schema.mm.EntitySrcNat entitySrcNat)
      Consume a particular Cif category.
      void consumeEntitySrcSyn​(org.rcsb.cif.schema.mm.PdbxEntitySrcSyn entitySrcSyn)
      Consume a particular Cif category.
      void consumeExptl​(org.rcsb.cif.schema.mm.Exptl exptl)
      Consume a particular Cif category.
      void consumePdbxAuditRevisionHistory​(org.rcsb.cif.schema.mm.PdbxAuditRevisionHistory pdbxAuditRevisionHistory)
      Consume a particular Cif category.
      void consumePdbxChemCompIdentifier​(org.rcsb.cif.schema.mm.PdbxChemCompIdentifier pdbxChemCompIdentifier)
      Consume a particular Cif category.
      void consumePdbxDatabaseStatus​(org.rcsb.cif.schema.mm.PdbxDatabaseStatus pdbxDatabaseStatus)
      Consume a particular Cif category.
      void consumePdbxEntityBranchDescriptor​(org.rcsb.cif.schema.mm.PdbxEntityBranchDescriptor pdbxEntityBranchDescriptor)
      Consume a particular Cif category.
      void consumePdbxMolecule​(org.rcsb.cif.schema.mm.PdbxMolecule pdbxMolecule)
      Consume a particular Cif category.
      void consumePdbxMoleculeFeatures​(org.rcsb.cif.schema.mm.PdbxMoleculeFeatures pdbxMoleculeFeatures)
      Consume a particular Cif category.
      void consumePdbxNonpolyScheme​(org.rcsb.cif.schema.mm.PdbxNonpolyScheme pdbxNonpolyScheme)
      Consume a particular Cif category.
      void consumePdbxReferenceEntityLink​(org.rcsb.cif.schema.mm.PdbxReferenceEntityLink pdbxReferenceEntityLink)
      Consume a particular Cif category.
      void consumePdbxReferenceEntityList​(org.rcsb.cif.schema.mm.PdbxReferenceEntityList pdbxReferenceEntityList)
      Consume a particular Cif category.
      void consumePdbxReferenceEntityPolyLink​(org.rcsb.cif.schema.mm.PdbxReferenceEntityPolyLink pdbxReferenceEntityPolyLink)
      Consume a particular Cif category.
      void consumePdbxStructAssembly​(org.rcsb.cif.schema.mm.PdbxStructAssembly pdbxStructAssembly)
      Consume a particular Cif category.
      void consumePdbxStructAssemblyGen​(org.rcsb.cif.schema.mm.PdbxStructAssemblyGen pdbxStructAssemblyGen)
      Consume a particular Cif category.
      void consumePdbxStructModResidue​(org.rcsb.cif.schema.mm.PdbxStructModResidue pdbxStructModResidue)
      Consume a particular Cif category.
      void consumePdbxStructOperList​(org.rcsb.cif.schema.mm.PdbxStructOperList pdbxStructOperList)
      Consume a particular Cif category.
      void consumeRefine​(org.rcsb.cif.schema.mm.Refine refine)
      Consume a particular Cif category.
      void consumeStruct​(org.rcsb.cif.schema.mm.Struct struct)
      Consume a particular Cif category.
      void consumeStructAsym​(org.rcsb.cif.schema.mm.StructAsym structAsym)
      Consume a particular Cif category.
      void consumeStructConf​(org.rcsb.cif.schema.mm.StructConf structConf)
      Consume a particular Cif category.
      void consumeStructConn​(org.rcsb.cif.schema.mm.StructConn structConn)
      Consume a particular Cif category.
      void consumeStructConnType​(org.rcsb.cif.schema.mm.StructConnType structConnType)
      Consume a particular Cif category.
      void consumeStructKeywords​(org.rcsb.cif.schema.mm.StructKeywords structKeywords)
      Consume a particular Cif category.
      void consumeStructNcsOper​(org.rcsb.cif.schema.mm.StructNcsOper structNcsOper)
      Consume a particular Cif category.
      void consumeStructRef​(org.rcsb.cif.schema.mm.StructRef structRef)
      Consume a particular Cif category.
      void consumeStructRefSeq​(org.rcsb.cif.schema.mm.StructRefSeq structRefSeq)
      Consume a particular Cif category.
      void consumeStructRefSeqDif​(org.rcsb.cif.schema.mm.StructRefSeqDif structRefSeqDif)
      Consume a particular Cif category.
      void consumeStructSheetRange​(org.rcsb.cif.schema.mm.StructSheetRange structSheetRange)
      Consume a particular Cif category.
      void consumeStructSite​(org.rcsb.cif.schema.mm.StructSite structSite)
      Consume a particular Cif category.
      void consumeStructSiteGen​(org.rcsb.cif.schema.mm.StructSiteGen structSiteGen)
      Consume a particular Cif category.
      void consumeSymmetry​(org.rcsb.cif.schema.mm.Symmetry symmetry)
      Consume a particular Cif category.

    • Method Detail

      • consumeAtomSite

        void consumeAtomSite​(org.rcsb.cif.schema.mm.AtomSite atomSite)
        Consume a particular Cif category.
        Parameters:
        atomSite - data

      • consumeAtomSites

        void consumeAtomSites​(org.rcsb.cif.schema.mm.AtomSites atomSites)
        Consume a particular Cif category.
        Parameters:
        atomSites - data

      • consumeAuditAuthor

        void consumeAuditAuthor​(org.rcsb.cif.schema.mm.AuditAuthor auditAuthor)
        Consume a particular Cif category.
        Parameters:
        auditAuthor - data

      • consumeCell

        void consumeCell​(org.rcsb.cif.schema.mm.Cell cell)
        Consume a particular Cif category.
        Parameters:
        cell - data

      • consumeChemComp

        void consumeChemComp​(org.rcsb.cif.schema.mm.ChemComp chemComp)
        Consume a particular Cif category.
        Parameters:
        chemComp - data

      • consumeChemCompBond

        void consumeChemCompBond​(org.rcsb.cif.schema.mm.ChemCompBond chemCompBond)
        Consume a particular Cif category.
        Parameters:
        chemCompBond - data

      • consumeDatabasePDBRemark

        void consumeDatabasePDBRemark​(org.rcsb.cif.schema.mm.DatabasePDBRemark databasePDBremark)
        Consume a particular Cif category.
        Parameters:
        databasePDBremark - data

      • consumeDatabasePDBRev

        void consumeDatabasePDBRev​(org.rcsb.cif.schema.mm.DatabasePDBRev databasePDBrev)
        Consume a particular Cif category.
        Parameters:
        databasePDBrev - data

      • consumeDatabasePDBRevRecord

        void consumeDatabasePDBRevRecord​(org.rcsb.cif.schema.mm.DatabasePDBRevRecord databasePDBrevRecord)
        Consume a particular Cif category.
        Parameters:
        databasePDBrevRecord - data

      • consumeEm3dReconstruction

        void consumeEm3dReconstruction​(org.rcsb.cif.schema.mm.Em3dReconstruction em3dReconstruction)
        Consume Electron Microscopy 3D reconstruction data
        Parameters:
        em3dReconstruction -

      • consumeEntity

        void consumeEntity​(org.rcsb.cif.schema.mm.Entity entity)
        Consume a particular Cif category.
        Parameters:
        entity - data

      • consumeEntityPoly

        void consumeEntityPoly​(org.rcsb.cif.schema.mm.EntityPoly entityPoly)
        Consume a particular Cif category.
        Parameters:
        entityPoly - data

      • consumeEntitySrcGen

        void consumeEntitySrcGen​(org.rcsb.cif.schema.mm.EntitySrcGen entitySrcGen)
        Consume a particular Cif category.
        Parameters:
        entitySrcGen - data

      • consumeEntitySrcNat

        void consumeEntitySrcNat​(org.rcsb.cif.schema.mm.EntitySrcNat entitySrcNat)
        Consume a particular Cif category.
        Parameters:
        entitySrcNat - data

      • consumeEntitySrcSyn

        void consumeEntitySrcSyn​(org.rcsb.cif.schema.mm.PdbxEntitySrcSyn entitySrcSyn)
        Consume a particular Cif category.
        Parameters:
        entitySrcSyn - data

      • consumeEntityPolySeq

        void consumeEntityPolySeq​(org.rcsb.cif.schema.mm.EntityPolySeq entityPolySeq)
        Consume a particular Cif category.
        Parameters:
        entityPolySeq - data

      • consumeExptl

        void consumeExptl​(org.rcsb.cif.schema.mm.Exptl exptl)
        Consume a particular Cif category.
        Parameters:
        exptl - data

      • consumePdbxAuditRevisionHistory

        void consumePdbxAuditRevisionHistory​(org.rcsb.cif.schema.mm.PdbxAuditRevisionHistory pdbxAuditRevisionHistory)
        Consume a particular Cif category.
        Parameters:
        pdbxAuditRevisionHistory - data

      • consumePdbxChemCompIdentifier

        void consumePdbxChemCompIdentifier​(org.rcsb.cif.schema.mm.PdbxChemCompIdentifier pdbxChemCompIdentifier)
        Consume a particular Cif category.
        Parameters:
        pdbxChemCompIdentifier - data

      • consumePdbxDatabaseStatus

        void consumePdbxDatabaseStatus​(org.rcsb.cif.schema.mm.PdbxDatabaseStatus pdbxDatabaseStatus)
        Consume a particular Cif category.
        Parameters:
        pdbxDatabaseStatus - data

      • consumePdbxEntityBranchDescriptor

        void consumePdbxEntityBranchDescriptor​(org.rcsb.cif.schema.mm.PdbxEntityBranchDescriptor pdbxEntityBranchDescriptor)
        Consume a particular Cif category.
        Parameters:
        pdbxEntityBranchDescriptor - data

      • consumePdbxMolecule

        void consumePdbxMolecule​(org.rcsb.cif.schema.mm.PdbxMolecule pdbxMolecule)
        Consume a particular Cif category.
        Parameters:
        pdbxMolecule - data

      • consumePdbxMoleculeFeatures

        void consumePdbxMoleculeFeatures​(org.rcsb.cif.schema.mm.PdbxMoleculeFeatures pdbxMoleculeFeatures)
        Consume a particular Cif category.
        Parameters:
        pdbxMoleculeFeatures - data

      • consumePdbxNonpolyScheme

        void consumePdbxNonpolyScheme​(org.rcsb.cif.schema.mm.PdbxNonpolyScheme pdbxNonpolyScheme)
        Consume a particular Cif category.
        Parameters:
        pdbxNonpolyScheme - data

      • consumePdbxReferenceEntityLink

        void consumePdbxReferenceEntityLink​(org.rcsb.cif.schema.mm.PdbxReferenceEntityLink pdbxReferenceEntityLink)
        Consume a particular Cif category.
        Parameters:
        pdbxReferenceEntityLink - data

      • consumePdbxReferenceEntityList

        void consumePdbxReferenceEntityList​(org.rcsb.cif.schema.mm.PdbxReferenceEntityList pdbxReferenceEntityList)
        Consume a particular Cif category.
        Parameters:
        pdbxReferenceEntityList - data

      • consumePdbxReferenceEntityPolyLink

        void consumePdbxReferenceEntityPolyLink​(org.rcsb.cif.schema.mm.PdbxReferenceEntityPolyLink pdbxReferenceEntityPolyLink)
        Consume a particular Cif category.
        Parameters:
        pdbxReferenceEntityPolyLink - data

      • consumePdbxStructAssembly

        void consumePdbxStructAssembly​(org.rcsb.cif.schema.mm.PdbxStructAssembly pdbxStructAssembly)
        Consume a particular Cif category.
        Parameters:
        pdbxStructAssembly - data

      • consumePdbxStructAssemblyGen

        void consumePdbxStructAssemblyGen​(org.rcsb.cif.schema.mm.PdbxStructAssemblyGen pdbxStructAssemblyGen)
        Consume a particular Cif category.
        Parameters:
        pdbxStructAssemblyGen - data

      • consumePdbxStructModResidue

        void consumePdbxStructModResidue​(org.rcsb.cif.schema.mm.PdbxStructModResidue pdbxStructModResidue)
        Consume a particular Cif category.
        Parameters:
        pdbxStructModResidue - data

      • consumePdbxStructOperList

        void consumePdbxStructOperList​(org.rcsb.cif.schema.mm.PdbxStructOperList pdbxStructOperList)
        Consume a particular Cif category.
        Parameters:
        pdbxStructOperList - data

      • consumeRefine

        void consumeRefine​(org.rcsb.cif.schema.mm.Refine refine)
        Consume a particular Cif category.
        Parameters:
        refine - data

      • consumeStruct

        void consumeStruct​(org.rcsb.cif.schema.mm.Struct struct)
        Consume a particular Cif category.
        Parameters:
        struct - data

      • consumeStructAsym

        void consumeStructAsym​(org.rcsb.cif.schema.mm.StructAsym structAsym)
        Consume a particular Cif category.
        Parameters:
        structAsym - data

      • consumeStructConf

        void consumeStructConf​(org.rcsb.cif.schema.mm.StructConf structConf)
        Consume a particular Cif category.
        Parameters:
        structConf - data

      • consumeStructConn

        void consumeStructConn​(org.rcsb.cif.schema.mm.StructConn structConn)
        Consume a particular Cif category.
        Parameters:
        structConn - data

      • consumeStructConnType

        void consumeStructConnType​(org.rcsb.cif.schema.mm.StructConnType structConnType)
        Consume a particular Cif category.
        Parameters:
        structConnType - data

      • consumeStructKeywords

        void consumeStructKeywords​(org.rcsb.cif.schema.mm.StructKeywords structKeywords)
        Consume a particular Cif category.
        Parameters:
        structKeywords - data

      • consumeStructNcsOper

        void consumeStructNcsOper​(org.rcsb.cif.schema.mm.StructNcsOper structNcsOper)
        Consume a particular Cif category.
        Parameters:
        structNcsOper - data

      • consumeStructRef

        void consumeStructRef​(org.rcsb.cif.schema.mm.StructRef structRef)
        Consume a particular Cif category.
        Parameters:
        structRef - data

      • consumeStructRefSeq

        void consumeStructRefSeq​(org.rcsb.cif.schema.mm.StructRefSeq structRefSeq)
        Consume a particular Cif category.
        Parameters:
        structRefSeq - data

      • consumeStructRefSeqDif

        void consumeStructRefSeqDif​(org.rcsb.cif.schema.mm.StructRefSeqDif structRefSeqDif)
        Consume a particular Cif category.
        Parameters:
        structRefSeqDif - data

      • consumeStructSheetRange

        void consumeStructSheetRange​(org.rcsb.cif.schema.mm.StructSheetRange structSheetRange)
        Consume a particular Cif category.
        Parameters:
        structSheetRange - data

      • consumeStructSite

        void consumeStructSite​(org.rcsb.cif.schema.mm.StructSite structSite)
        Consume a particular Cif category.
        Parameters:
        structSite - data

      • consumeStructSiteGen

        void consumeStructSiteGen​(org.rcsb.cif.schema.mm.StructSiteGen structSiteGen)
        Consume a particular Cif category.
        Parameters:
        structSiteGen - data

      • consumeSymmetry

        void consumeSymmetry​(org.rcsb.cif.schema.mm.Symmetry symmetry)
        Consume a particular Cif category.
        Parameters:
        symmetry - data