Uses of Package
org.biojava.nbio.structure.scop

Packages that use org.biojava.nbio.structure.scop

Package	Description
org.biojava.nbio.structure.align.client	This package deals with the server communication for auto-downloading pre-calculated alignments.
org.biojava.nbio.structure.align.util
org.biojava.nbio.structure.gui.util
org.biojava.nbio.structure.scop	Parsers and API for SCOP, Structural Classification of Proteins.

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.align.client

Class	Description
ScopDatabase	General API how to interact with SCOP
ScopDomain	Container for the information for a domain.

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.align.util

Class	Description
ScopDatabase	General API how to interact with SCOP
ScopDomain	Container for the information for a domain.

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.gui.util

Class	Description
ScopDatabase	General API how to interact with SCOP

Classes in org.biojava.nbio.structure.scop used by org.biojava.nbio.structure.scop

Class	Description
Astral.AstralSet	An ASTRAL sequence-identity cutoff with an identifier such as:
LocalScopDatabase	Classes which implement ScopDatabase in a way which allows them to serve queries without accessing the internet should implement this interface instead.
ScopCategory	The various categories provided by SCOP.
ScopDatabase	General API how to interact with SCOP
ScopDescription	Contains data from dir.des.scop.txt_1.75
ScopDomain	Container for the information for a domain.
ScopInstallation	This class provides access to the SCOP protein structure classification.
ScopIOException	Indicates that an I/O error occurred with SCOP lazy initialization.
ScopMirror	Helper class to store paths to the four SCOP files The string "%s" is replaced with the version number.
ScopNode