RemotePairwiseAlignmentOutputProperties (biojava 6.1.0 API)

All Superinterfaces:

Serializable

All Known Implementing Classes:

NCBIQBlastOutputProperties
```
public interface RemotePairwiseAlignmentOutputProperties
extends Serializable
```
RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.

Since:

Biojava 3

Author:

Sylvain Foisy, Diploide BioIT

Field Summary

Fields
Modifier and Type Field Description

static long serialVersionUID

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`String`	`getOutputOption(String key)`	Method that returns the value associated with the key given in parameter.
`Set<String>`	`getOutputOptions()`	Method to get all keys to the information stored in this object.
`void`	`setOutputOption(String key, String val)`	Method to set the value for a specific output parameter using a key to store in a map.

- Field Detail
  - serialVersionUID
```
static final long serialVersionUID
```
    See Also:
    
    Constant Field Values
- Method Detail
  - getOutputOption
```
String getOutputOption(String key)
                throws Exception
```
    Method that returns the value associated with the key given in parameter.
    
    Parameters:
    
    key - :a String with the required key for this map.
    
    Returns:
    
    a String with the value associated with this key
    
    Throws:
    
    Exception - if key is not in the map of output options.
  - setOutputOption
```
void setOutputOption(String key,
                     String val)
```
    Method to set the value for a specific output parameter using a key to store in a map.
    
    Parameters:
    
    key - :the key use to designate the value to be stored
    
    val - :the actual value matched to key
  - getOutputOptions
```
Set<String> getOutputOptions()
```
    Method to get all keys to the information stored in this object.
    
    Returns:
    
    a Set with all keys held in this instance of the object