001/*
002 *                    BioJava development code
003 *
004 * This code may be freely distributed and modified under the
005 * terms of the GNU Lesser General Public Licence.  This should
006 * be distributed with the code.  If you do not have a copy,
007 * see:
008 *
009 *      http://www.gnu.org/copyleft/lesser.html
010 *
011 * Copyright for this code is held jointly by the individual
012 * authors.  These should be listed in @author doc comments.
013 *
014 * For more information on the BioJava project and its aims,
015 * or to join the biojava-l mailing list, visit the home page
016 * at:
017 *
018 *      http://www.biojava.org/
019 *
020 */
021package demo;
022
023import org.biojava.nbio.structure.Structure;
024import org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol;
025import org.biojava.nbio.structure.StructureIO;
026
027
028/** Demo how to load and display a structure in Jmol
029 *
030 * @author Andreas Prlic
031 *
032 */
033public class ShowStructureInJmol {
034        public static void main(String[] args){
035                try {
036
037                        Structure struc = StructureIO.getStructure("1aoi");
038
039                        StructureAlignmentJmol jmolPanel = new StructureAlignmentJmol();
040
041                        jmolPanel.setStructure(struc);
042
043                        // send some RASMOL style commands to Jmol
044                        jmolPanel.evalString("select * ; color chain;");
045                        jmolPanel.evalString("select nucleic; cartoon on;");
046                        jmolPanel.evalString("select *; spacefill off; wireframe off; cartoon on;  ");
047                } catch (Exception e){
048                        e.printStackTrace();
049                }
050        }
051}