001/* 002 * BioJava development code 003 * 004 * This code may be freely distributed and modified under the 005 * terms of the GNU Lesser General Public Licence. This should 006 * be distributed with the code. If you do not have a copy, 007 * see: 008 * 009 * http://www.gnu.org/copyleft/lesser.html 010 * 011 * Copyright for this code is held jointly by the individual 012 * authors. These should be listed in @author doc comments. 013 * 014 * For more information on the BioJava project and its aims, 015 * or to join the biojava-l mailing list, visit the home page 016 * at: 017 * 018 * http://www.biojava.org/ 019 * 020 * Author: Daniel Asarnow 021 * Date: 2012-6-23 022 */ 023 024package org.biojava.nbio.structure.cath; 025 026import java.io.Serializable; 027 028/** Represents a node in the CATH hierarchy. 029 * 030 * @author Daniel Asarnow 031 */ 032public class CathNode implements Serializable{ 033 034 public static final long serialVersionUID = 1L; 035 036 /** 037 * The CATH code of the node, e.g. "1.10.8.10". 038 */ 039 String nodeId; 040 041 /** 042 * The CATH code of the parent, e.g. "1.10.8". Calculated during parsing. 043 */ 044 String parentId; 045 046 /** 047 * The representative domain for this node. 048 */ 049 String representative; 050 051 /** 052 * A name or description. 053 */ 054 String description; 055 056 /** 057 * This node's level within the hierarchy. One of CATH, not CATHSOLID. 058 */ 059 CathCategory category; 060 061 public String getNodeId() { 062 return nodeId; 063 } 064 065 public void setNodeId(String nodeId) { 066 this.nodeId = nodeId; 067 this.category = CathCategory.fromCathCode(nodeId); 068 } 069 070 public String getParentId() { 071 return parentId; 072 } 073 074 public void setParentId(String parentId) { 075 this.parentId = parentId; 076 } 077 078 public String getRepresentative() { 079 return representative; 080 } 081 082 public void setRepresentative(String representative) { 083 this.representative = representative; 084 } 085 086 public String getDescription() { 087 return description; 088 } 089 090 public void setDescription(String description) { 091 this.description = description; 092 } 093 094 public CathCategory getCategory() { 095 return category; 096 } 097 098 @Override 099 public String toString() { 100 return ""; //TODO implement 101 } 102}