Uses of Class
org.biojava.nbio.alignment.GuideTree

Packages that use GuideTree

Package	Description
org.biojava.nbio.alignment

Uses of GuideTree in org.biojava.nbio.alignment

Methods in org.biojava.nbio.alignment with parameters of type GuideTree

Modifier and Type	Method	Description
static <S extends Sequence<C>, C extends Compound> Profile<S,C>	Alignments.getProgressiveAlignment(GuideTree<S,C> tree, Alignments.ProfileProfileAlignerType type, GapPenalty gapPenalty, SubstitutionMatrix<C> subMatrix)	Factory method to run the profile-profile alignments of a progressive multiple sequence alignment concurrently.