Package org.biojava.nbio.genome.query

Class OutputHitsGFF

java.lang.Object

org.biojava.nbio.genome.query.OutputHitsGFF

public class OutputHitsGFF
extends Object

Author:

Scooter Willis

Constructor Summary

Constructors

Constructor	Description
OutputHitsGFF()

Method Summary

Modifier and Type	Method	Description
static void	main(String[] args)
void	process(File blastXMLFile, File gffFile, File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

OutputHitsGFF

public OutputHitsGFF()

Method Details

process

public void process(File blastXMLFile,
 File gffFile,
 File gffOutputFile,
 double maxEScore,
 double percentageAligned,
 boolean includeFrameShift,
 boolean includeNegativeStrand)
             throws Exception

Throws:

Exception

main

public static void main(String[] args)