Package org.biojava.nbio.structure

Class Model

java.lang.Object

org.biojava.nbio.structure.Model

All Implemented Interfaces:

Serializable

public class Model
extends Object
implements Serializable

An internal utility class for StructureImpl to make it easier to manage poly and nonpoly chains. Not to exposed to users through API. Created by andreas on 5/3/16.

Since:

5.0

Author:

Andreas Prlic

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
Model()

Method Summary

Modifier and Type	Method	Description
void	addChain(Chain c)
List<Chain>	getChains()	Get all chains: polymeric, non-polymeric and water
List<Chain>	getNonPolyChains()
List<Chain>	getPolyChains()
List<Chain>	getWaterChains()
void	setChains(List<Chain> modelChains)
int	size()	Returns the total number of chains in this model: polymeric, non-polymeric and water
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Model

public Model()

Method Details

getPolyChains

public List<Chain> getPolyChains()

getNonPolyChains

public List<Chain> getNonPolyChains()

getWaterChains

public List<Chain> getWaterChains()

getChains

public List<Chain> getChains()

Get all chains: polymeric, non-polymeric and water

Returns:

setChains

public void setChains(List<Chain> modelChains)

addChain

public void addChain(Chain c)

size

public int size()

Returns the total number of chains in this model: polymeric, non-polymeric and water

Returns:

toString

public String toString()

Overrides:

toString in class Object