Package org.biojava.nbio.structure.align.ce

Interface ConfigStrucAligParams

All Known Implementing Classes:
CECPParameters, CeParameters, CESymmParameters, FatCatParameters, MultipleMcParameters, OptimalCECPParameters, SmithWaterman3DParameters
public interface ConfigStrucAligParams

  • Method Details

    • getUserConfigParameters

      List<String> getUserConfigParameters()
      get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.
      Returns:
      list of parameters

    • getUserConfigParameterNames

      List<String> getUserConfigParameterNames()
      The labels to be displayed to the user for each parameter
      Returns:
      list of parameter names

    • getUserConfigTypes

      List<Class> getUserConfigTypes()
      Get the data types of the parameters
      Returns:
      list of parameter classes

    • getUserConfigHelp

      List<String> getUserConfigHelp()
      The help text for each of these parameters.
      Returns:
      help strings

    • reset

      void reset()
      Set the parameters to the default.