Package org.biojava.nbio.structure.align.ce

Interface ConfigStrucAligParams

All Known Implementing Classes:

CECPParameters, CeParameters, CESymmParameters, FatCatParameters, MultipleMcParameters, OptimalCECPParameters, SmithWaterman3DParameters

public interface ConfigStrucAligParams

Method Summary

Modifier and Type	Method	Description
List<String>	getUserConfigHelp()	The help text for each of these parameters.
List<String>	getUserConfigParameterNames()	The labels to be displayed to the user for each parameter
List<String>	getUserConfigParameters()	get the list of parameters that the user can change through the user interface.
List<Class>	getUserConfigTypes()	Get the data types of the parameters
void	reset()	Set the parameters to the default.

Method Details

getUserConfigParameters

List<String> getUserConfigParameters()

get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.

Returns:

list of parameters

getUserConfigParameterNames

List<String> getUserConfigParameterNames()

The labels to be displayed to the user for each parameter

Returns:

list of parameter names

getUserConfigTypes

List<Class> getUserConfigTypes()

Get the data types of the parameters

Returns:

list of parameter classes

getUserConfigHelp

List<String> getUserConfigHelp()

The help text for each of these parameters.

Returns:

help strings

reset

void reset()

Set the parameters to the default.