Package org.biojava.nbio.structure.align.gui

Class MultipleAlignmentCalc

java.lang.Object

org.biojava.nbio.structure.align.gui.MultipleAlignmentCalc

All Implemented Interfaces:

Runnable, AlignmentCalculationRunnable

public class MultipleAlignmentCalc
extends Object
implements AlignmentCalculationRunnable

A class that obtains structures via DAS and aligns them. This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.

Since:

4.2.0

Author:

Aleix Lafita

Constructor Summary

Constructors

Constructor	Description
MultipleAlignmentCalc(MultipleAlignmentGUI parent, List<Structure> structures, List<StructureIdentifier> names)	Requests an alignment of the pdbs.

Method Summary

Modifier and Type	Method	Description
void	cleanup()
void	interrupt()
void	run()
void	setNrCPUs(int useNrCPUs)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MultipleAlignmentCalc

public MultipleAlignmentCalc(MultipleAlignmentGUI parent,
 List<Structure> structures,
 List<StructureIdentifier> names)

Requests an alignment of the pdbs. If they are empty strings, they are ignored.

Parameters:

parent - the gui frame that interacts with this class

structures -

names -

Method Details

run

public void run()

Specified by:

run in interface Runnable

interrupt

public void interrupt()

Specified by:

interrupt in interface AlignmentCalculationRunnable

cleanup

public void cleanup()

Specified by:

cleanup in interface AlignmentCalculationRunnable

setNrCPUs

public void setNrCPUs(int useNrCPUs)

Specified by:

setNrCPUs in interface AlignmentCalculationRunnable