Package org.biojava.nbio.structure.align.model

Class AFP

java.lang.Object

org.biojava.nbio.structure.align.model.AFP

All Implemented Interfaces:

Serializable

public class AFP
extends Object
implements Serializable

A class to represent a FATCAT aligned fragment pair (AFP)

Author:

Andreas Prlic

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
AFP()

Method Summary

Modifier and Type	Method	Description
int	getFragLen()
long	getId()
Matrix	getM()
int	getP1()
int	getP2()
double	getRmsd()
double	getScore()
double[]	getT()
void	setFragLen(int fragLen)
void	setId(long id)
void	setM(Matrix m)
void	setP1(int p1)
void	setP2(int p2)
void	setRmsd(double rmsd)
void	setScore(double score)
void	setT(double[] t)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

AFP

public AFP()

Method Details

toString

public String toString()

Overrides:

toString in class Object

getId

public long getId()

setId

public void setId(long id)

getP1

public int getP1()

setP1

public void setP1(int p1)

getP2

public int getP2()

setP2

public void setP2(int p2)

getFragLen

public int getFragLen()

setFragLen

public void setFragLen(int fragLen)

getRmsd

public double getRmsd()

setRmsd

public void setRmsd(double rmsd)

getM

public Matrix getM()

setM

public void setM(Matrix m)

getT

public double[] getT()

setT

public void setT(double[] t)

getScore

public double getScore()

setScore

public void setScore(double score)