org.biojava.nbio.structure.align.pairwise.FragmentPair

public class FragmentPair extends Object

a pair of fragments of two protein structures

Constructor Details
- FragmentPair
  
  public FragmentPair(int length, int p1, int p2)
Method Details
- clone
  
  public Object clone()
  
  Overrides:
  
  clone in class Object
- getCluster
  
  public int getCluster()
- setCluster
  
  public void setCluster(int cluster)
- getContacts
  
  public int getContacts()
- setContacts
  
  public void setContacts(int contacts)
- getCovered
  
  public int getCovered()
- setCovered
  
  public void setCovered(int covered)
- getLength
  
  public int getLength()
- setLength
  
  public void setLength(int length)
- getPos1
  
  public int getPos1()
- setPos1
  
  public void setPos1(int pos1)
- getPos2
  
  public int getPos2()
- setPos2
  
  public void setPos2(int pos2)
- getRms
  
  public double getRms()
- setRms
  
  public void setRms(double rms)
- getRot
  
  public Matrix getRot()
- setRot
  
  public void setRot(Matrix rot)
- getTrans
  
  public Atom getTrans()
- setTrans
  
  public void setTrans(Atom trans)
- getUnitv
  
  public Atom getUnitv()
- setUnitv
  
  public void setUnitv(Atom unitv)
- getUsed
  
  public int getUsed()
- setUsed
  
  public void setUsed(int used)
- getCenter1
  
  public Atom getCenter1()
- setCenter1
  
  public void setCenter1(Atom center1)
- getCenter2
  
  public Atom getCenter2()
- setCenter2
  
  public void setCenter2(Atom center2)
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object

Class FragmentPair

Constructor Summary