Uses of Class org.biojava.nbio.structure.basepairs.BasePairParameters (biojava 7.1.4 API)

Packages that use BasePairParameters

Package

Description

org.biojava.nbio.structure.basepairs

Uses of BasePairParameters in org.biojava.nbio.structure.basepairs

Subclasses of BasePairParameters in org.biojava.nbio.structure.basepairs

Modifier and Type

Class

Description

class

MismatchedBasePairParameters

This class allows for finding inter-strand base pairs that are not necessarily canonical Watson-Crick pairs.

class

TertiaryBasePairParameters

This class also finds the base pairing and base-pair step parameters but has a broader definition of a base pair so that non-canonical-WC base pairs will be detected and reported.

Methods in org.biojava.nbio.structure.basepairs that return BasePairParameters

Modifier and Type

Method

Description

BasePairParameters

BasePairParameters.analyze()

This method is the main function call to extract all step parameters, pairing parameters, and sequence information from the Structure object provided to the constructor.