Package org.biojava.nbio.structure.chem

Class ChemCompAtom

java.lang.Object

org.biojava.nbio.structure.chem.ChemCompAtom

All Implemented Interfaces:

Serializable, CifBean

public class ChemCompAtom
extends Object
implements CifBean

Properties of an atom of a chemical component.

Since:

6.0.0

Author:

Sebastian Bittrich

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
ChemCompAtom()

Method Summary

Modifier and Type	Method	Description
String	getAltAtomId()
String	getAtomId()
int	getCharge()
String	getCompId()
double	getModelCartnX()
double	getModelCartnY()
double	getModelCartnZ()
int	getPdbxAlign()
String	getPdbxAromaticFlag()
String	getPdbxComponentAtomId()
String	getPdbxComponentCompId()
String	getPdbxComponentId()
String	getPdbxLeavingAtomFlag()
double	getPdbxModelCartnXIdeal()
double	getPdbxModelCartnYIdeal()
double	getPdbxModelCartnZIdeal()
int	getPdbxOrdinal()
String	getPdbxPolymerType()
String	getPdbxRefId()
String	getPdbxResidueNumbering()
String	getPdbxStereoConfig()
String	getTypeSymbol()
void	setAltAtomId(String altAtomId)
void	setAtomId(String atomId)
void	setCharge(int charge)
void	setCompId(String compId)
void	setModelCartnX(double modelCartnX)
void	setModelCartnY(double modelCartnY)
void	setModelCartnZ(double modelCartnZ)
void	setPdbxAlign(int pdbxAlign)
void	setPdbxAromaticFlag(String pdbxAromaticFlag)
void	setPdbxComponentAtomId(String pdbxComponentAtomId)
void	setPdbxComponentCompId(String pdbxComponentCompId)
void	setPdbxComponentId(String pdbxComponentId)
void	setPdbxLeavingAtomFlag(String pdbxLeavingAtomFlag)
void	setPdbxModelCartnXIdeal(double pdbxModelCartnXIdeal)
void	setPdbxModelCartnYIdeal(double pdbxModelCartnYIdeal)
void	setPdbxModelCartnZIdeal(double pdbxModelCartnZIdeal)
void	setPdbxOrdinal(int pdbxOrdinal)
void	setPdbxPolymerType(String pdbxPolymerType)
void	setPdbxRefId(String pdbxRefId)
void	setPdbxResidueNumbering(String pdbxResidueNumbering)
void	setPdbxStereoConfig(String pdbxStereoConfig)
void	setTypeSymbol(String typeSymbol)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ChemCompAtom

public ChemCompAtom()

Method Details

getCompId

public String getCompId()

setCompId

public void setCompId(String compId)

getAtomId

public String getAtomId()

setAtomId

public void setAtomId(String atomId)

getAltAtomId

public String getAltAtomId()

setAltAtomId

public void setAltAtomId(String altAtomId)

getTypeSymbol

public String getTypeSymbol()

setTypeSymbol

public void setTypeSymbol(String typeSymbol)

getCharge

public int getCharge()

setCharge

public void setCharge(int charge)

getPdbxAlign

public int getPdbxAlign()

setPdbxAlign

public void setPdbxAlign(int pdbxAlign)

getPdbxAromaticFlag

public String getPdbxAromaticFlag()

setPdbxAromaticFlag

public void setPdbxAromaticFlag(String pdbxAromaticFlag)

getPdbxLeavingAtomFlag

public String getPdbxLeavingAtomFlag()

setPdbxLeavingAtomFlag

public void setPdbxLeavingAtomFlag(String pdbxLeavingAtomFlag)

getPdbxStereoConfig

public String getPdbxStereoConfig()

setPdbxStereoConfig

public void setPdbxStereoConfig(String pdbxStereoConfig)

getModelCartnX

public double getModelCartnX()

setModelCartnX

public void setModelCartnX(double modelCartnX)

getModelCartnY

public double getModelCartnY()

setModelCartnY

public void setModelCartnY(double modelCartnY)

getModelCartnZ

public double getModelCartnZ()

setModelCartnZ

public void setModelCartnZ(double modelCartnZ)

getPdbxModelCartnXIdeal

public double getPdbxModelCartnXIdeal()

setPdbxModelCartnXIdeal

public void setPdbxModelCartnXIdeal(double pdbxModelCartnXIdeal)

getPdbxModelCartnYIdeal

public double getPdbxModelCartnYIdeal()

setPdbxModelCartnYIdeal

public void setPdbxModelCartnYIdeal(double pdbxModelCartnYIdeal)

getPdbxModelCartnZIdeal

public double getPdbxModelCartnZIdeal()

setPdbxModelCartnZIdeal

public void setPdbxModelCartnZIdeal(double pdbxModelCartnZIdeal)

getPdbxComponentCompId

public String getPdbxComponentCompId()

setPdbxComponentCompId

public void setPdbxComponentCompId(String pdbxComponentCompId)

getPdbxResidueNumbering

public String getPdbxResidueNumbering()

setPdbxResidueNumbering

public void setPdbxResidueNumbering(String pdbxResidueNumbering)

getPdbxComponentAtomId

public String getPdbxComponentAtomId()

setPdbxComponentAtomId

public void setPdbxComponentAtomId(String pdbxComponentAtomId)

getPdbxPolymerType

public String getPdbxPolymerType()

setPdbxPolymerType

public void setPdbxPolymerType(String pdbxPolymerType)

getPdbxRefId

public String getPdbxRefId()

setPdbxRefId

public void setPdbxRefId(String pdbxRefId)

getPdbxComponentId

public String getPdbxComponentId()

setPdbxComponentId

public void setPdbxComponentId(String pdbxComponentId)

getPdbxOrdinal

public int getPdbxOrdinal()

setPdbxOrdinal

public void setPdbxOrdinal(int pdbxOrdinal)