Uses of Interface
org.biojava.nbio.structure.Bond
Package
Description
Interfaces and classes for protein structure (PDB).
Input and Output of Structures
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Uses of Bond in org.biojava.nbio.structure
Modifier and TypeClassDescriptionclass
A simple bond -- it stores information about two atoms as well as information about its bond order.Modifier and TypeMethodDescriptionAtom.getBonds()
Get allBond
s this atom is part of.AtomImpl.getBonds()
Get allBond
s this atom is part of.Structure.getSSBonds()
Get the list of disulfide Bonds as they have been defined in the PDB filesStructureImpl.getSSBonds()
Get the list of disulfide Bonds as they have been defined in the PDB filesModifier and TypeMethodDescriptionvoid
Add a bondvoid
void
Add a single disulfide Bond to this structurevoid
Adds a single disulfide Bond to this structureModifier and TypeMethodDescriptionvoid
Sets the bondsvoid
Sets the bondsvoid
Structure.setSSBonds
(List<Bond> ssbonds) Set the list of SSBonds for this structurevoid
StructureImpl.setSSBonds
(List<Bond> ssbonds) Set the list of SSBonds for this structure -
Uses of Bond in org.biojava.nbio.structure.io
Modifier and TypeMethodDescriptionstatic SSBondImpl
Converts the givenBond
object into aSSBondImpl
.Modifier and TypeMethodDescriptionstatic List
<SSBondImpl> SSBondImpl.getSsBondListFromBondList
(List<Bond> bonds)