Package org.biojava.nbio.structure.io.mmtf

Class MmtfSummaryDataBean

java.lang.Object
org.biojava.nbio.structure.io.mmtf.MmtfSummaryDataBean
public class MmtfSummaryDataBean extends Object
Class to store the summary data for a given structure.
Author:
Anthony Bradley

  • Constructor Details

  • Method Details

    • getAllChains

      public List<Chain> getAllChains()
      Returns:
      the list of chains (in all models) in the structure

    • setAllChains

      public void setAllChains(List<Chain> allChains)
      Parameters:
      allChains - the list of chains (in all models) in the structure

    • getAllAtoms

      public List<Atom> getAllAtoms()
      Returns:
      the list of atoms (in all models) in the structure

    • setAllAtoms

      public void setAllAtoms(List<Atom> allAtoms)
      Parameters:
      allAtoms - the list of atoms (in all models) in the structure

    • getNumBonds

      public int getNumBonds()
      Returns:
      the number of covalent bonds in the structure

    • setNumBonds

      public void setNumBonds(int numBonds)
      Parameters:
      numBonds - the number of covalent bonds in the structure

    • getChainIdToIndexMap

      public Map<String,Integer> getChainIdToIndexMap()
      Returns:
      the map of chain ids (strings asymId) to the index of that chain in the allChains list. This only applies for the first model in the structure.

    • setChainIdToIndexMap

      public void setChainIdToIndexMap(Map<String,Integer> chainIdToIndexMap)
      Parameters:
      chainIdToIndexMap - the map of chain ids (strings asymId) to the index of that chain in the allChains list. This only applies for the first model in the structure.