Package org.biojava.nbio.structure.quaternary

Class BioAssemblyInfo

java.lang.Object

org.biojava.nbio.structure.quaternary.BioAssemblyInfo

All Implemented Interfaces:

Serializable

public class BioAssemblyInfo
extends Object
implements Serializable

Representation of a Biological Assembly annotation as provided by the PDB. Contains all the information required to build the Biological Assembly from the asymmetric unit. Note that the PDB allows for 1 or more Biological Assemblies for a given entry. They are identified by the id field.

Author:

Jose Duarte

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
BioAssemblyInfo()	Empty constructor

Method Summary

Modifier and Type	Method	Description
int	getId()	The identifier for this Biological Assembly, from 1 to n
int	getMacromolecularSize()	Returns the macromolecular size of this biological assembly, i.e.
List<BiologicalAssemblyTransformation>	getTransforms()	Return the list of BiologicalAssemblyTransformations needed to generate the biological assembly.
void	setId(int id)
void	setMacromolecularSize(int macromolecularSize)
void	setTransforms(List<BiologicalAssemblyTransformation> transforms)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

BioAssemblyInfo

public BioAssemblyInfo()

Empty constructor

Method Details

getId

public int getId()

The identifier for this Biological Assembly, from 1 to n

Returns:

setId

public void setId(int id)

getTransforms

public List<BiologicalAssemblyTransformation> getTransforms()

Return the list of BiologicalAssemblyTransformations needed to generate the biological assembly. There is one transformation per internal chain id.

Returns:

setTransforms

public void setTransforms(List<BiologicalAssemblyTransformation> transforms)

getMacromolecularSize

public int getMacromolecularSize()

Returns the macromolecular size of this biological assembly, i.e. the number of polymeric chains (protein or nucleotide chains, not sugars) in the biological assembly.

Returns:

setMacromolecularSize

public void setMacromolecularSize(int macromolecularSize)

toString

public String toString()

Overrides:

toString in class Object