Uses of Class
org.biojava.nbio.structure.secstruc.SecStrucState

Packages that use SecStrucState

Package	Description
org.biojava.nbio.structure.secstruc

Uses of SecStrucState in org.biojava.nbio.structure.secstruc

Methods in org.biojava.nbio.structure.secstruc that return types with arguments of type SecStrucState

Modifier and Type	Method	Description
List<SecStrucState>	SecStrucCalc.calculate(Structure s, boolean assign)	Predicts the secondary structure of this Structure object, using a DSSP implementation.
static List<SecStrucState>	DSSPParser.parseFile(String dsspPath, Structure structure, boolean assign)	Parse a DSSP output file and return the secondary structure annotation as a List of SecStrucState objects.
static List<SecStrucState>	DSSPParser.parseInputStream(InputStream dsspIs, Structure structure, boolean assign)	Parse a DSSP output file and return the secondary structure annotation as a List of SecStrucState objects.
static List<SecStrucState>	DSSPParser.parseString(String dsspOut, Structure structure, boolean assign)	Parse a DSSP format String and return the secondary structure annotation as a List of SecStrucState objects.