Uses of Package
org.biojava.nbio.structure.symmetry.internal
Packages that use org.biojava.nbio.structure.symmetry.internal
Package
Description
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Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.guiClassDescriptionProvides parameters to
CeSymm.This Class stores all the relevant information of an internal symmetry result obtained with CeSymm. -
Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.internalClassDescriptionProvides parameters to
CeSymm.The internal symmetry detection can be divided into two types: CLOSE: includes the circular and dihedral symmetries, and OPEN: includes the helical and protein repeats symmetries.This Class stores all the relevant information of an internal symmetry result obtained with CeSymm.A method to decide the order of symmetry (number of subunits) given a structure self-alignment, calculated by CE-Symm.Refinement of the self-alignment failed.A ResidueGroup is a set of residues that are part of a maximally connected component of the self-Alignment Graph in symmetry analysis.Data Structure that stores all the symmetry axis that describe the symmetry of a structure.Represents an axis of symmetryInterface for all symmetry refinement implementations. -
Classes in org.biojava.nbio.structure.symmetry.internal used by org.biojava.nbio.structure.symmetry.utilsClassDescriptionThis Class stores all the relevant information of an internal symmetry result obtained with CeSymm.Data Structure that stores all the symmetry axis that describe the symmetry of a structure.