Package org.biojava.nbio.structure.symmetry.jmolScript

Class JmolSymmetryScriptGeneratorDn

java.lang.Object

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorDn

public class JmolSymmetryScriptGeneratorDn
extends JmolSymmetryScriptGeneratorPointGroup

Author:

Peter

Constructor Summary

Constructors

Constructor	Description
JmolSymmetryScriptGeneratorDn(RotationAxisAligner axisTransformation, String name)

Method Summary

Modifier and Type	Method	Description
int	getOrientationCount()	Returns the number of orientations available for this structure
String	getOrientationName(int index)	Returns the name of a specific orientation
int	getZoom()	Returns the Jmol zoom to fit polyhedron and symmetry axes.

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGeneratorPointGroup

colorBySequenceCluster, colorBySubunit, colorBySymmetry, drawAxes, drawPolyhedron, getAxisTransformation, getDefaultOrientation, getMaxExtension, getMeanExtension, getOrientation, getOrientationWithZoom, getPolyhedron, getRotationGroup, getTransformation, hideAxes, hidePolyhedron, playOrientations, setAxisTransformation, setDefaultColoring, setOnTheFly, setPolyhedron, setRotationGroup, showAxes, showPolyhedron

Methods inherited from class org.biojava.nbio.structure.symmetry.jmolScript.JmolSymmetryScriptGenerator

f1Dot2, fDot2, getInstance, getInstantaneousOrientation, getJmolColor, getJmolColorScript, getJmolLigandScript, getJmolPoint, jMolFloat

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

JmolSymmetryScriptGeneratorDn

public JmolSymmetryScriptGeneratorDn(RotationAxisAligner axisTransformation,
 String name)

Method Details

getZoom

public int getZoom()

Description copied from class: JmolSymmetryScriptGenerator

Returns the Jmol zoom to fit polyhedron and symmetry axes. This zoom level should be used so that the polyhedron and symmetry axes are not cutoff.

Specified by:

getZoom in class JmolSymmetryScriptGeneratorPointGroup

Returns:

getOrientationCount

public int getOrientationCount()

Description copied from class: JmolSymmetryScriptGenerator

Returns the number of orientations available for this structure

Overrides:

getOrientationCount in class JmolSymmetryScriptGeneratorPointGroup

Returns:

number of orientations

getOrientationName

public String getOrientationName(int index)

Returns the name of a specific orientation

Overrides:

getOrientationName in class JmolSymmetryScriptGeneratorPointGroup

Parameters:

index - orientation index

Returns:

name of orientation