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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/class-use/HierarchicalClusterer.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/class-use/PairwiseSequenceAligner.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/class-use/ProfileProfileScorer.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/class-use/RescoreRefiner.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/package-summary.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/alignment/template/package-use.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/SimpleProfile.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/SimpleProfilePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/SimpleSequencePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/class-use/SimpleAlignedSequence.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/class-use/SimpleProfile.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/class-use/SimpleProfilePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/class-use/SimpleSequencePair.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/AAIndexFileParser.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/AAIndexProvider.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/AAindexFactory.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/DefaultAAIndexProvider.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/ScaledSubstitutionMatrix.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/SubstitutionMatrixHelper.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/AAIndexFileParser.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/AAIndexProvider.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/AAindexFactory.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/DefaultAAIndexProvider.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/ScaledSubstitutionMatrix.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/SimpleSubstitutionMatrix.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/class-use/SubstitutionMatrixHelper.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/package-summary.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/package-tree.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/matrices/package-use.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/package-summary.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/package-tree.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/package-use.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/AlignedSequence.Step.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/AlignedSequence.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/MutableAlignedSequence.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/MutableProfile.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/MutableProfilePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/MutableSequencePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/Profile.StringFormat.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/Profile.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/ProfilePair.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/SequencePair.html</loc>
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<url>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/MutableAlignedSequence.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/MutableProfile.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/MutableProfilePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/MutableSequencePair.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/Profile.StringFormat.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/Profile.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/ProfilePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/ProfileView.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/SequencePair.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/class-use/SubstitutionMatrix.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/core/alignment/template/package-summary.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifChainSupplierImpl.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifFileConsumer.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifFileSupplier.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifStructureConsumer.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifStructureConsumerImpl.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifStructureConverter.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/CifStructureSupplierImpl.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/MetalBondConsumer.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/MetalBondConsumerImpl.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/class-use/MetalBondConverter.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/package-summary.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/package-tree.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/cif/package-use.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/BcifFileReader.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/BondMaker.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/CAConverter.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/ChargeAdder.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/CifFileReader.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/EntityFinder.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/FastaAFPChainConverter.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/FastaStructureParser.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/FileConvert.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/FileParsingParameters.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/GroupToSDF.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.FetchBehavior.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.ObsoleteBehavior.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/LocalPDBDirectory.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/MMTFFileReader.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/PDBBioAssemblyParser.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/PDBFileParser.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/PDBFileReader.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/PDBParseException.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/SSBondImpl.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/SeqRes2AtomAligner.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/StructureFiletype.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/StructureIOFile.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/StructureProvider.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/class-use/StructureSequenceMatcher.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/MmtfActions.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/MmtfStructureReader.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/MmtfStructureWriter.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/MmtfSummaryDataBean.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/MmtfUtils.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/class-use/MmtfActions.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/class-use/MmtfStructureReader.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/class-use/MmtfStructureWriter.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/class-use/MmtfSummaryDataBean.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/class-use/MmtfUtils.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/mmtf/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsChainEntry.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsChainToUniprotMapping.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsEntity.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsMappingProvider.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsResidue.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsSegment.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/SiftsXMLParser.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsChainEntry.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsChainToUniprotMapping.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsEntity.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsMappingProvider.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsResidue.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsSegment.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/class-use/SiftsXMLParser.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/sifts/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/PDBTemporaryStorageUtils.LinkRecord.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/PDBTemporaryStorageUtils.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/class-use/PDBTemporaryStorageUtils.LinkRecord.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/class-use/PDBTemporaryStorageUtils.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/io/util/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/CholeskyDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/EigenvalueDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/LUDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/Maths.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/Matrix.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/QRDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/SingularValueDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/CholeskyDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/EigenvalueDecomposition.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/LUDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/Maths.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/Matrix.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/QRDecomposition.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/class-use/SingularValueDecomposition.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/jama/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/SparseSquareMatrix.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/SparseVector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/SymbolTable.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/class-use/SparseSquareMatrix.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/class-use/SparseVector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/class-use/SymbolTable.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/package-summary.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/package-tree.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/math/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/package-tree.html</loc>
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</url>
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<url>
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<url>
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<url>
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<url>
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</url>
<url>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/Tetrahedron.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/class-use/DistanceBox.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/class-use/IcosahedralSampler.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/class-use/Octahedron.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/class-use/Polyhedron.html</loc>
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<url>
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<url>
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<url>
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<url>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/package-summary.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/package-tree.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/geometry/package-use.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryCalc.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryDisplay.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryGui.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryListener.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/package-summary.html</loc>
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<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/package-tree.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/gui/package-use.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/AngleOrderDetectorPlus.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.OrderDetectorMethod.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.RefineMethod.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.SymmetryType.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CeSymm.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/OrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/RefinerFailedException.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/ResidueGroup.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/SequenceFunctionOrderDetector.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/SequenceFunctionRefiner.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/SymmOptimizer.html</loc>
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</url>
<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/SymmetryRefiner.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/AngleOrderDetectorPlus.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.OrderDetectorMethod.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.RefineMethod.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.SymmetryType.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CESymmParameters.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymm.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymmIterative.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/CeSymmResult.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/GraphComponentOrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/GraphComponentRefiner.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/OrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/RefinerFailedException.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/ResidueGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SequenceFunctionOrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SequenceFunctionRefiner.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SymmOptimizer.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryAxes.Axis.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryAxes.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/class-use/SymmetryRefiner.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/internal/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/ColorConverter.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGenerator.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorC1.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorCn.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorDn.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorH.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorI.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorO.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorPointGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/JmolSymmetryScriptGeneratorT.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/class-use/ColorConverter.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/structure/symmetry/jmolScript/class-use/JmolSymmetryScriptGenerator.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/survival/cox/comparators/MeanModelComparator.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/survival/cox/comparators/SurvivalInfoComparator.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/survival/cox/comparators/SurvivalInfoValueComparator.html</loc>
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<url>
<loc>https://biojava.org/docs/api/org/biojava/nbio/survival/cox/comparators/class-use/CoxComparatorInterface.html</loc>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/BasicImapRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/BeadFeatureRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/BumpedRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularFeatureRenderer.html</loc>
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<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularFeaturesRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularMLR.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularRenderer.html</loc>
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<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularRendererContext.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CircularRendererPanel.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/CrosshairRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/EllipticalBeadRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/FeatureBlockSequenceRenderer.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/FeatureLabelRenderer.AnnotationLabelMaker.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/FeatureLabelRenderer.LabelMaker.html</loc>
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<url>
<loc>https://biojava.org/docs/api1.9.5/org/biojava/bio/gui/sequence/class-use/FeatureLabelRenderer.SourceLabelMaker.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/RotationAxisAligner.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/AxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/C2RotationSolver.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/ClusterProteinChains.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/HelicalRepeatUnit.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/HelixAxisAligner.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/HelixLayers.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/HelixSolver.html</loc>
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<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/Rotation.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/RotationAxisAligner.html</loc>
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<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/RotationGroup.html</loc>
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<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/RotationSolver.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/SubunitGraph.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/Subunits.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/SystematicSolver.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/class-use/UniqueSequenceList.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/package-frame.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/package-summary.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/package-tree.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/core/package-use.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/Icosahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/MomentsOfInertia.SymmetryClass.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/MomentsOfInertia.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/Prism.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/SuperPosition.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/SuperPositionQCP.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/MomentsOfInertia.SymmetryClass.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/MomentsOfInertia.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/Prism.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPosition.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPositionQCP.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/class-use/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/package-frame.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/package-summary.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/package-tree.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/geometry/package-use.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryCalc.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryDisplay.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryGui.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryListener.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/package-frame.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/package-summary.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/package-tree.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/gui/package-use.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/AngleOrderDetectorPlus.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.OrderDetectorMethod.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.RefineMethod.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.SymmetryType.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CeSymm.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.0/org/biojava/nbio/structure/symmetry/internal/OrderDetector.html</loc>
<lastmod>2025-01-09T01:07:56+00:00</lastmod>
</url>
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<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/AxisAligner.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/HelixLayers.html</loc>
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<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/RotationAxisAligner.html</loc>
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<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/RotationGroup.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/Subunits.html</loc>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/class-use/UniqueSequenceList.html</loc>
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<url>
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<lastmod>2025-01-09T01:07:57+00:00</lastmod>
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<lastmod>2025-01-09T01:07:57+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/package-tree.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/core/package-use.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/Icosahedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/MomentsOfInertia.SymmetryClass.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/MomentsOfInertia.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/Prism.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/SuperPosition.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/SuperPositionQCP.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/MomentsOfInertia.SymmetryClass.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/MomentsOfInertia.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/Prism.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPosition.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPositionQCP.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/class-use/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/package-frame.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/package-summary.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/package-tree.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/geometry/package-use.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryCalc.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryDisplay.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryGui.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryListener.html</loc>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/package-frame.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/package-summary.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/package-tree.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/gui/package-use.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/AngleOrderDetectorPlus.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.OrderDetectorMethod.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.RefineMethod.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.SymmetryType.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CeSymm.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api4.2.1/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.html</loc>
<lastmod>2025-01-09T01:07:57+00:00</lastmod>
</url>
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<url>
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</url>
<url>
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</url>
<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/IcosahedralSampler.html</loc>
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</url>
<url>
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<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/MomentsOfInertia.SymmetryClass.html</loc>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html</loc>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/class-use/SphereSampler.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPosition.html</loc>
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<url>
<loc>https://biojava.org/docs/api4.2.9/org/biojava/nbio/structure/symmetry/geometry/class-use/SuperPositionQCP.html</loc>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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</url>
<url>
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</url>
<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api6.1.0/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/HelixAxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/RotationAxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/class-use/AxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/class-use/HelixAxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/class-use/RotationAxisAligner.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/package-summary.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/package-tree.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/axis/package-use.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/C2RotationSolver.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/HelicalRepeatUnit.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/Helix.html</loc>
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<url>
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<url>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/HelixSolver.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/PermutationGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSuperpositionScorer.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetryDetector.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetryParameters.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetryResults.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetryScores.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetrySolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/QuatSymmetrySubunits.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/Rotation.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/RotationGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/RotationSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/Stoichiometry.StringOverflowStrategy.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/Stoichiometry.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/SymmetryPerceptionMethod.html</loc>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/SystematicSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/C2RotationSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/HelicalRepeatUnit.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/Helix.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/HelixExtender.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/HelixLayers.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/HelixSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/PermutationGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSuperpositionScorer.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryParameters.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryResults.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetryScores.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetrySolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/QuatSymmetrySubunits.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/Rotation.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/RotationGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/RotationSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/Stoichiometry.StringOverflowStrategy.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/Stoichiometry.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/SymmetryPerceptionMethod.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/class-use/SystematicSolver.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/core/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/Icosahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/Prism.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/DistanceBox.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/IcosahedralSampler.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/Icosahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/Octahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/Polyhedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/Prism.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/RectangularPrism.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/SphereSampler.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/class-use/Tetrahedron.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/geometry/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/SymmetryCalc.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/SymmetryDisplay.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/SymmetryGui.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/SymmetryListener.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryCalc.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryDisplay.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryGui.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/class-use/SymmetryListener.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/package-summary.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/package-tree.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/gui/package-use.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/AngleOrderDetectorPlus.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.OrderDetectorMethod.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.RefineMethod.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.SymmetryType.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CESymmParameters.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CeSymm.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/CeSymmResult.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/OrderDetector.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/RefinerFailedException.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
</url>
<url>
<loc>https://biojava.org/docs/api7.1.4/org/biojava/nbio/structure/symmetry/internal/ResidueGroup.html</loc>
<lastmod>2025-01-09T01:07:59+00:00</lastmod>
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