Uses of Interface
org.biojava.bio.program.gff.GFFRecordFilter

Packages that use GFFRecordFilter

Package	Description
org.biojava.bio.program.gff	GFF manipulation.

Uses of GFFRecordFilter in org.biojava.bio.program.gff

Classes in org.biojava.bio.program.gff that implement GFFRecordFilter

Modifier and Type	Class and Description
static class	GFFRecordFilter.AcceptAll Implementation of GFFRecordFilter that accepts everything.
static class	GFFRecordFilter.FeatureFilter Implementation of GFFRecordFilter that accepts records based upon the feature field.
static class	GFFRecordFilter.FrameFilter
static class	GFFRecordFilter.NotFilter
static class	GFFRecordFilter.SequenceFilter Implementation of GFFRecordFilter that accepts records based upon the sequence name.
static class	GFFRecordFilter.SourceFilter Implementation of GFFRecordFilter that accepts records based upon the source field.
static class	GFFRecordFilter.StrandFilter

Fields in org.biojava.bio.program.gff declared as GFFRecordFilter

Modifier and Type	Field and Description
static GFFRecordFilter	GFFRecordFilter.ACCEPT_ALL A GFFRecordFilter that accepts everything.

Methods in org.biojava.bio.program.gff that return GFFRecordFilter

Modifier and Type	Method and Description
GFFRecordFilter	GFFRecordFilter.NotFilter.getFilter()

Methods in org.biojava.bio.program.gff with parameters of type GFFRecordFilter

Modifier and Type	Method and Description
GFFEntrySet	GFFEntrySet.filter(GFFRecordFilter filter) Filter this entry set into another set.
static GFFEntrySet	GFFTools.readGFF(BufferedReader gffIn, GFFRecordFilter recFilt) Read all GFF entries matching a filter from a buffered reader.
static GFFEntrySet	GFFTools.readGFF(File inFile, GFFRecordFilter recFilt) Reads a GFFEntrySet from a file with the specified filter.
static GFFEntrySet	GFFTools.readGFF(String fileName, GFFRecordFilter recFilt) Deprecated. use: readGff(File,GFFRecordFilter)
void	GFFRecordFilter.NotFilter.setFilter(GFFRecordFilter filter)

Constructors in org.biojava.bio.program.gff with parameters of type GFFRecordFilter

Constructor and Description
GFFFilterer(GFFDocumentHandler handler, GFFRecordFilter filter) Create a new GFFFilterer that will forward to handler everything that filter accepts.
GFFRecordFilter.NotFilter(GFFRecordFilter filter)