Package | Description |
---|---|
org.biojava.nbio.structure.gui |
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
|
org.biojava.nbio.structure.gui.util.color |
Modifier and Type | Field and Description |
---|---|
protected Map<String,ContinuousColorMapper> |
ScaleableMatrixPanel.gradients |
Modifier and Type | Method and Description |
---|---|
ContinuousColorMapper |
ScaleableMatrixPanel.getCellColor() |
ContinuousColorMapper |
JMatrixPanel.getCellColor() |
Modifier and Type | Method and Description |
---|---|
protected static Map<String,ContinuousColorMapper> |
ScaleableMatrixPanel.createGradients() |
Modifier and Type | Method and Description |
---|---|
void |
ScaleableMatrixPanel.setCellColor(ContinuousColorMapper cellColor) |
void |
JMatrixPanel.setCellColor(ContinuousColorMapper cellColor) |
Modifier and Type | Class and Description |
---|---|
class |
ContinuousColorMapperTransform
Maps colors by performing a transform of the input data and then passing
the transformed value to a ContinuousColorMapper for rendering.
|
class |
DefaultMatrixMapper
Color Mapper which mimics the default coloring of JMatrixPanel pixels.
|
class |
GradientMapper
Maps a set of real values onto a gradient.
|
class |
LogColorMapper
Performs a log10 transform on input before passing the values off to another
colorMapper.
|
class |
SqrtColorMapper
Performs a sqrt transform on input before passing the values off to another
colorMapper.
|
Modifier and Type | Field and Description |
---|---|
protected ContinuousColorMapper |
ContinuousColorMapperTransform.mapper |
Constructor and Description |
---|
ContinuousColorMapperTransform(ContinuousColorMapper submapper)
Creates a transform.
|
GradientPanel(ContinuousColorMapper mapper,
double min,
double max) |
LogColorMapper(ContinuousColorMapper logspaceMapper)
Creates a new LogColorMapper with base 10.
|
LogColorMapper(ContinuousColorMapper logspaceMapper,
int base)
If logspaceMapper maps values x1 to x2, this creates a
mapper for values base^x1 to base^x2
|
SqrtColorMapper(ContinuousColorMapper sqrtspaceMapper)
Creates a new SqrtColorMapper.
|
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