Uses of Class
org.biojava.nbio.aaproperties.xml.AminoAcidCompositionTable
Packages that use AminoAcidCompositionTable
Package
Description
Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.
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Uses of AminoAcidCompositionTable in org.biojava.nbio.aaproperties
Methods in org.biojava.nbio.aaproperties that return AminoAcidCompositionTableModifier and TypeMethodDescriptionIPeptideProperties.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile) This method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).IPeptideProperties.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile) This method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).static final AminoAcidCompositionTablePeptideProperties.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile) An adaptor method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).static final AminoAcidCompositionTablePeptideProperties.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile) An adaptor method would initialize amino acid composition table based on the input xml files and stores the table for usage in future calls to IPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence, AminoAcidCompositionTable).PeptidePropertiesImpl.obtainAminoAcidCompositionTable(File aminoAcidCompositionFile) PeptidePropertiesImpl.obtainAminoAcidCompositionTable(File elementMassFile, File aminoAcidCompositionFile) Methods in org.biojava.nbio.aaproperties with parameters of type AminoAcidCompositionTableModifier and TypeMethodDescriptiondoubleIPeptideProperties.getMolecularWeightBasedOnXML(ProteinSequence sequence, AminoAcidCompositionTable aminoAcidCompositionTable) Returns the molecular weight of sequence.static doublePeptideProperties.getMolecularWeightBasedOnXML(String sequence, AminoAcidCompositionTable aminoAcidCompositionTable) An adaptor method that returns the molecular weight of sequence.doublePeptidePropertiesImpl.getMolecularWeightBasedOnXML(ProteinSequence sequence, AminoAcidCompositionTable aminoAcidCompositionTable)