Class FractionalSimilarityInProfileScorer<S extends Sequence<C>,​C extends Compound>

    • Constructor Detail

      • FractionalSimilarityInProfileScorer

        public FractionalSimilarityInProfileScorer​(Profile<S,​C> profile,
                                                   int query,
                                                   int target)
        Creates a fractional similarity scorer for an aligned pair of sequences in the given alignment profile.
        profile - alignment profile containing pair of sequences
        query - index in the profile of the first sequence of the pair
        target - index in the profile of the second sequence of the pair