Package org.biojava.nbio.alignment.template

Interface PairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>

Type Parameters:
S - each Sequence of the alignment pair is of type S
C - each element of a sequence is a Compound of type C
All Superinterfaces:
Aligner<S,C>, PairwiseSequenceScorer<S,C>, Scorer
All Known Implementing Classes:
AbstractPairwiseSequenceAligner, AnchoredPairwiseSequenceAligner, GuanUberbacher, NeedlemanWunsch, SmithWaterman
public interface PairwiseSequenceAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, PairwiseSequenceScorer<S,C>
Defines an Aligner for a pair of Sequences.
Author:
Mark Chapman

  • Method Details